question-mark
Stuck on an issue?

Lightrun Answers was designed to reduce the constant googling that comes with debugging 3rd party libraries. It collects links to all the places you might be looking at while hunting down a tough bug.

And, if you’re still stuck at the end, we’re happy to hop on a call to see how we can help out.

Error while installing

See original GitHub issue

The readme says that the installation specifically requires UMLS MRCONSO.RRF and MRSTY.RRF. I put these files separately in a new directory and provide it as an argument <umls_installation_path>. When I do python -m quickumls.install <umls_installation_path> <destination_path>, I get the following error: Traceback (most recent call last): File "/users/PAS1440/deyosu78/.conda/envs/chemprop/lib/python3.6/runpy.py", line 183, in _run_module_as_main mod_name, mod_spec, code = _get_module_details(mod_name, _Error) File "/users/PAS1440/deyosu78/.conda/envs/chemprop/lib/python3.6/runpy.py", line 109, in _get_module_details __import__(pkg_name) File "/users/PAS1440/deyosu78/.conda/envs/chemprop/lib/python3.6/site-packages/quickumls/__init__.py", line 1, in <module> from .core import QuickUMLS File "/users/PAS1440/deyosu78/.conda/envs/chemprop/lib/python3.6/site-packages/quickumls/core.py", line 17, in <module> from . import toolbox File "/users/PAS1440/deyosu78/.conda/envs/chemprop/lib/python3.6/site-packages/quickumls/toolbox.py", line 23, in <module> from quickumls_simstring import simstring File "/users/PAS1440/deyosu78/.conda/envs/chemprop/lib/python3.6/site-packages/quickumls_simstring/simstring.py", line 28, in <module> _simstring = swig_import_helper() File "/users/PAS1440/deyosu78/.conda/envs/chemprop/lib/python3.6/site-packages/quickumls_simstring/simstring.py", line 24, in swig_import_helper _mod = imp.load_module('_simstring', fp, pathname, description) File "/users/PAS1440/deyosu78/.conda/envs/chemprop/lib/python3.6/imp.py", line 243, in load_module return load_dynamic(name, filename, file) File "/users/PAS1440/deyosu78/.conda/envs/chemprop/lib/python3.6/imp.py", line 343, in load_dynamic return _load(spec) ImportError: /users/PAS1440/deyosu78/.conda/envs/chemprop/lib/python3.6/site-packages/quickumls_simstring/_simstring.so: undefined symbol: libiconv I don’t know how to resolve this? Anyone faced this issue before? Any solution?

Issue Analytics

  • State:open
  • Created 3 years ago
  • Reactions:1
  • Comments:7 (1 by maintainers)

github_iconTop GitHub Comments

1reaction
alicerogier555commented, Aug 29, 2022

Great ! If you are working on a jupyter notebook, don’t forget to set the variable also on jupyter (https://github.com/jupyter/notebook/issues/3704 )

1reaction
alicerogier555commented, Aug 29, 2022

Hello @jdposada,

I set the variable with “/usr/local/lib/libiconv.so” Maybe you should use this command : whereris libiconv to see where libiconv is installed.

Hope this will work for you

Read more comments on GitHub >

github_iconTop Results From Across the Web

Message "Error while installing" - Apple Support Communities
Whenever I start my Macbook, "Error while installing" shows and it says "Expecting value: line 1 column 1(char 0)".
Read more >
How to fix "Error while installing" pops up on Mac? - Fireebok
How to fix "Error while installing" pops up on Mac? · 1. Remove Startup items · 2. Update or uninstall old third-party apps...
Read more >
"Error while installing expecting value" Message Mac Removal
“Error while installing” is a browser hijacker app that is known for targeting Mac browsers and causing uncontrolled ad-generation and page ...
Read more >
9 Ways to Fix an Error Occurred While Preparing the Installation
【Fixed】How to Fix an Error Occurred While Preparing the Installation Error? · Fix 1: Restart your Mac · Fix 2: Check the Date...
Read more >
You see "Error while installing updates!" on macOS - McAfee
You might see the following error message on a Mac that has McAfee security software for macOS installed: Error while installing updates!
Read more >

github_iconTop Related Medium Post

No results found

github_iconTop Related StackOverflow Question

No results found

github_iconTroubleshoot Live Code

Lightrun enables developers to add logs, metrics and snapshots to live code - no restarts or redeploys required.
Start Free

github_iconTop Related Reddit Thread

No results found

github_iconTop Related Hackernoon Post

No results found

github_iconTop Related Tweet

No results found

github_iconTop Related Dev.to Post

No results found

github_iconTop Related Hashnode Post

No results found