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jbrowse-cli text indexer subcommand
See original GitHub issueimplement an indexing subcommand in jbrowse-cli that can create text indexes.
Initially, this will probably feed data to the ixIxx binary from the kent utils to make a trix index that we will read with the #1826 adapter
Issue Analytics
- State:
- Created 3 years ago
- Reactions:1
- Comments:18 (11 by maintainers)
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Just for reference, the code for ixixx appears to be a relatively small amount of code https://github.com/ucscGenomeBrowser/kent/blob/master/src/index/ixIxx/ixIxx.c
https://github.com/GMOD/jbrowse-components/blob/2ec41e7611c23be3dfbf93f6078563820b3c5e8e/products/jbrowse-cli/trix-docs.md