Stuck on an issue?

Lightrun Answers was designed to reduce the constant googling that comes with debugging 3rd party libraries. It collects links to all the places you might be looking at while hunting down a tough bug.

And, if you’re still stuck at the end, we’re happy to hop on a call to see how we can help out.

Parameter profiles to hdf5

See original GitHub issue

At the moment I’m saving the parameter estimation results and corresponding problem to hdf5. This helps to recall the waterfall and parameter plot. However I noticed that it isn’t possible to save enough data to recall the parameter profiles plot. Would it be possible to get this implemented?

This is the error I get after reading the saved data and trying to get the three plots:

Traceback (most recent call last):

  File "/home/maartje/Documents/Helmholtz_ICB/mainICB.py", line 313, in <module>
    result1 = pypesto.parameter_profile(problem=problem,result=result,optimizer=optimizer)#,profile_options=profile_options)

  File "/home/maartje/anaconda3/envs/envICB/lib/python3.8/site-packages/pypesto/profile/profile.py", line 147, in parameter_profile
    profile_index = np.ones(problem.dim_full)

AttributeError: 'Result' object has no attribute 'dim_full'

Issue Analytics

State:
Created 3 years ago
Comments:7 (4 by maintainers)

Top GitHub Comments

1reaction

mhhoogcommented, May 14, 2020

Writing this out I see the bug in problem = hdf_result.read() …

0reactions

yannikschaeltecommented, Jun 18, 2020

This problem here should be resolved. Profiles cannot yet be saved to hdf5, that is handled in #410

Top Results From Across the Web

Profiling Using HDF5 User Guide - Slurm Workload Manager

These parameters are directly used by the HDF5 Profile Plugin. ProfileHDF5Dir=<path>: This parameter is the path to the shared folder into ...

Density profile from HDF5 · Issue #3514 - GitHub

Hi,. There is a few lines in density.param to load the profile from HDF5 file. This is in #261. I have questions regarding...

Easy Analysis of HDF5 Datasets - LinkedIn

In order to configure Drill to query HDF5 files, you will first have to set the following variables in the configuration for your...

Best way to save parameters in data? - Google Groups

Hello all,. So, I'm aware that you can save field data pretty simply, but I'm wondering what the best way is to save...

User-Defined functions for HDF5 — HDF5-UDF 2.1 ...

HDF5 -UDF is a mechanism to generate HDF5 dataset values on-the-fly using user-defined functions (UDFs). The platform supports UDFs written in Python, C++,...