Question: Steadystate prediciton
See original GitHub issueQuestion: how is steadystate prediciton defined? Is it default, and how can I specify if and when steadystate prediciton is used? I am getting the following error:
Exception has occurred: ValueError
Steadystate prediciton is not supported formodels with conservation laws!
in
site-packages\pypesto\petab\importer.py", line 267, in create_objective
after running this code:
petab_problem = petab.Problem.from_yaml('configuration.yaml')
testOut = petab_problem.get_optimization_to_simulation_parameter_mapping()
importer = pypesto.petab.PetabImporter(petab_problem)
model = importer.create_model()
import libsbml
converter_config = libsbml.SBMLLocalParameterConverter().getDefaultProperties()
petab_problem.sbml_document.convert(converter_config)
obj = importer.create_objective()
Issue Analytics
- State:
- Created 3 years ago
- Comments:12 (12 by maintainers)
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P.S.: Why not make the default model dependent? If supported, switch it on, if not switch it off. If requested by the user, but not supported, raise.
Thanks to everyone who helped.