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Open Zarr File on M1

See original GitHub issue

Create a conda environment with the required dependencies
Run the example below

from zarr.storage import FSStore
from itkwidgets import view
import zarr
fsstore = FSStore('https://dandiarchive.s3.amazonaws.com/zarr/7723d02f-1f71-4553-a7b0-47bda1ae8b42')
brainstem = zarr.open_group(fsstore, mode='r')

view(brainstem)

The following message pops up. The git command requires the command line developer tools The tools is not installed.

Issue Analytics

State:
Created a year ago
Comments:10 (3 by maintainers)

Top GitHub Comments

1reaction

jburelcommented, Nov 2, 2022

@PaulHax @thewtex we are having our community meeting over the next few weeks [1] We have sessions on the 10 of November going over the viewers currently opening zarr files. We will encourage people developing viewers to present their tools (~10mins) and discuss what’s needed from the specification point of views. Will you interested to join us? The meeting is free

[1] https://www.openmicroscopy.org/events/ome-community-meeting-2022/

1reaction

will-moorecommented, Oct 14, 2022

Thanks @PaulHax that’s great. I opened a PR to add itk-vtk-viewer links to all the v0.4 Images in https://idr.github.io/ome-ngff-samples/