Empty segmentation after anaconda installation

Dear all, the segmentation was working fine with my images but yesterday I installed a bunch of new packets and anaconda and now the segmentation is no more working.

I guess that it’s somehow related with new version of the installed packages but I’ve not been able to solve the issue.

I tried to remove and reinstall, both in pip3 (/Library/Frameworks/Python.framework/Versions/3.7/bin/pip3) and pip (/Users/Giulio/opt/anaconda3/bin/pip) but the issue is permanent.

$ which lungmask
/Users/Giulio/opt/anaconda3/bin/lungmask

Using another computer and the same image the segmentation is correct.

Is there a way to check what’s going on?

$ lungmask --modelname LTRCLobes /Users/Giulio/Desktop/test_seg/2_Std_25.nrrd /Users/Giulio/Desktop/test_seg/2_Std_25.seg.nrrd

Result in my pc (MacOS Mojave)

Result on my server (Ubuntu 19.04)

Thank you for the support. If you want I can provide more details on installation/folders etc.

Regards.

[JoHof]

It’s fixed and the --version parameter is also available from 0.2.4 on

[JoHof]

You did everything correct! I messed up. I just changed back to 0.2.3. However, I found the bug, it was a datatype issue that happened only when postprocessing volumetric data. I didn’t test volumetric data when I changed something. My bad! I will update shortly

btw you might add a --version in lungmask just to display the version.

Absolutely! Why didn’t I do that already?

Thanks for your help!