Unable to use search parameters on resources imported via bulk import

Describe the bug When I import a resource using the bulk import feature, I am unable to perform a search on this resource. The resource seems to be correctly imported though since it can be retrieved by its id or in the list of its resource type.

Everything works when the resource is created via a simple POST on the API.

To Reproduce

1. Import the following ndjson file containing one Patient resource

{"resourceType":"Patient","id":"1772b6bb75a-fd1b2296-6666-4ac1-8b06-f3651eebcc0a","meta":{"profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient"]},"text":{"status":"generated","div":"<div xmlns=\"http://www.w3.org/1999/xhtml\">Generated by <a href=\"https://github.com/synthetichealth/synthea\">Synthea</a>.Version identifier: master-branch-latest\n .   Person seed: 7504591771487461664  Population seed: 1604158140419</div>"},"extension":[{"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-race","extension":[{"url":"ombCategory","valueCoding":{"system":"urn:oid:2.16.840.1.113883.6.238","code":"2106-3","display":"White"}},{"url":"text","valueString":"White"}]},{"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity","extension":[{"url":"ombCategory","valueCoding":{"system":"urn:oid:2.16.840.1.113883.6.238","code":"2186-5","display":"Non Hispanic or Latino"}},{"url":"text","valueString":"Non Hispanic or Latino"}]},{"url":"http://hl7.org/fhir/StructureDefinition/patient-mothersMaidenName","valueString":"Librada521 Cassin499"},{"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex","valueCode":"M"},{"url":"http://hl7.org/fhir/StructureDefinition/patient-birthPlace","valueAddress":{"city":"Lynn","state":"Massachusetts","country":"US"}},{"url":"http://synthetichealth.github.io/synthea/disability-adjusted-life-years","valueDecimal":2.039551033112163},{"url":"http://synthetichealth.github.io/synthea/quality-adjusted-life-years","valueDecimal":58.96044896688784}],"identifier":[{"system":"https://github.com/synthetichealth/synthea","value":"05f7fb9c-3358-e686-d1ff-a6de1aa2aaf7"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"MR","display":"Medical Record Number"}],"text":"Medical Record Number"},"system":"http://hospital.smarthealthit.org","value":"05f7fb9c-3358-e686-d1ff-a6de1aa2aaf7"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"SS","display":"Social Security Number"}],"text":"Social Security Number"},"system":"http://hl7.org/fhir/sid/us-ssn","value":"999-32-8982"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"DL","display":"Driver's License"}],"text":"Driver's License"},"system":"urn:oid:2.16.840.1.113883.4.3.25","value":"S99935913"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"PPN","display":"Passport Number"}],"text":"Passport Number"},"system":"http://standardhealthrecord.org/fhir/StructureDefinition/passportNumber","value":"X71919634X"}],"name":[{"use":"official","family":"Volkman526","given":["Abdul218"],"prefix":["Mr."]}],"telecom":[{"system":"phone","value":"555-341-1712","use":"home"}],"gender":"male","birthDate":"1958-08-31","address":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/geolocation","extension":[{"url":"latitude","valueDecimal":42.06848443888001},{"url":"longitude","valueDecimal":-70.18801548971284}]}],"line":["405 Schmitt Knoll Unit 25"],"city":"Provincetown","state":"MA","country":"US"}],"maritalStatus":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v3-MaritalStatus","code":"M","display":"M"}],"text":"M"},"multipleBirthBoolean":false,"communication":[{"language":{"coding":[{"system":"urn:ietf:bcp:47","code":"en-US","display":"English"}],"text":"English"}}]}

1. Request a bulk import of this file

curl -k -v -u "fhiruser:change-password" -H 'Content-Type: application/fhir+json' 'https://localhost:9443/fhir-server/api/v4/$import' -d "{
    \"resourceType\": \"Parameters\",
    \"id\": \"30321130-5032-49fb-be54-9b8b82b2445a\",
    \"parameter\": [
        {
            \"name\": \"inputFormat\",
            \"valueString\": \"application/fhir+ndjson\"
        },
        {
            \"name\": \"inputSource\",
            \"valueUri\": \"https://localhost:9443/source-fhir-server\"
        },
        {
            \"name\": \"input\",
            \"part\": [
                {
                    \"name\": \"type\",
                    \"valueString\": \"Patient\"
                },
                {
                    \"name\": \"url\",
                    \"valueUrl\": \"https://webserv:8080/Patient.fhir.ndjson\"
                }
            ]
        },
        {
            \"name\": \"storageDetail\",
            \"valueString\": \"https\"
        }
    ]
}"

1. Search male patients

curl -X GET "https://localhost:9443/fhir-server/api/v4/Patient?gender=male" -H "accept: application/fhir+json"

The API returns :

{
  "resourceType": "Bundle",
  "id": "16312f11-49c7-4297-9a34-659ee1428052",
  "type": "searchset",
  "total": 0,
  "link": [
    {
      "relation": "self",
      "url": "https://localhost:9443/fhir-server/api/v4/Patient?_count=10&gender=male&_page=1"
    }
  ]
}

Expected behavior The request should returns the resource in the result

Additional context I am using ibmcom/ibm-fhir-server:4.5.4 Docker image

[prb112]

@tevariou I missed the resource in the original post. Thanks for the bug, I’ll look at it.

[prb112]

Second issue was the CacheSynchronization beforeCompletion wasn’t registered since the transaction was in progress. The PR addresses this issue, and may need an alternative implementation based on review.