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[BUG] Failed import of pairplot from graspy.plot

See original GitHub issue

Expected Behavior

Successful import of graspy.

Actual Behavior

Error raised: “Could not load shared object file: libllvmlite.dylib”

Full Traceback

>>> from graspy.plot import pairplot
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/graspy-0.3.0-py3.8.egg/graspy/__init__.py", line 6, in <module>
    import graspy.inference
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/graspy-0.3.0-py3.8.egg/graspy/inference/__init__.py", line 2, in <module>
    from .latent_distribution_test import LatentDistributionTest
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/graspy-0.3.0-py3.8.egg/graspy/inference/latent_distribution_test.py", line 27, in <module>
    from hyppo.ksample import KSample
  File "<frozen importlib._bootstrap>", line 991, in _find_and_load
  File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 655, in _load_unlocked
  File "<frozen importlib._bootstrap>", line 618, in _load_backward_compatible
  File "<frozen zipimport>", line 259, in load_module
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/hyppo-0.2.1-py3.8.egg/hyppo/__init__.py", line 1, in <module>
  File "<frozen importlib._bootstrap>", line 991, in _find_and_load
  File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 655, in _load_unlocked
  File "<frozen importlib._bootstrap>", line 618, in _load_backward_compatible
  File "<frozen zipimport>", line 259, in load_module
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/hyppo-0.2.1-py3.8.egg/hyppo/discrim/__init__.py", line 1, in <module>
  File "<frozen importlib._bootstrap>", line 991, in _find_and_load
  File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 655, in _load_unlocked
  File "<frozen importlib._bootstrap>", line 618, in _load_backward_compatible
  File "<frozen zipimport>", line 259, in load_module
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/hyppo-0.2.1-py3.8.egg/hyppo/discrim/discrim_one_samp.py", line 4, in <module>
  File "<frozen importlib._bootstrap>", line 991, in _find_and_load
  File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 655, in _load_unlocked
  File "<frozen importlib._bootstrap>", line 618, in _load_backward_compatible
  File "<frozen zipimport>", line 259, in load_module
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/hyppo-0.2.1-py3.8.egg/hyppo/discrim/_utils.py", line 4, in <module>
  File "<frozen importlib._bootstrap>", line 991, in _find_and_load
  File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 655, in _load_unlocked
  File "<frozen importlib._bootstrap>", line 618, in _load_backward_compatible
  File "<frozen zipimport>", line 259, in load_module
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/hyppo-0.2.1-py3.8.egg/hyppo/tools/__init__.py", line 4, in <module>
  File "<frozen importlib._bootstrap>", line 991, in _find_and_load
  File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 655, in _load_unlocked
  File "<frozen importlib._bootstrap>", line 618, in _load_backward_compatible
  File "<frozen zipimport>", line 259, in load_module
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/hyppo-0.2.1-py3.8.egg/hyppo/tools/power.py", line 5, in <module>
  File "<frozen importlib._bootstrap>", line 991, in _find_and_load
  File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 655, in _load_unlocked
  File "<frozen importlib._bootstrap>", line 618, in _load_backward_compatible
  File "<frozen zipimport>", line 259, in load_module
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/hyppo-0.2.1-py3.8.egg/hyppo/independence/__init__.py", line 3, in <module>
  File "<frozen importlib._bootstrap>", line 991, in _find_and_load
  File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 655, in _load_unlocked
  File "<frozen importlib._bootstrap>", line 618, in _load_backward_compatible
  File "<frozen zipimport>", line 259, in load_module
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/hyppo-0.2.1-py3.8.egg/hyppo/independence/dcorr.py", line 2, in <module>
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/numba/__init__.py", line 14, in <module>
    from numba.core import config
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/numba/core/config.py", line 16, in <module>
    import llvmlite.binding as ll
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/llvmlite/binding/__init__.py", line 4, in <module>
    from .dylib import *
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/llvmlite/binding/dylib.py", line 3, in <module>
    from llvmlite.binding import ffi
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/llvmlite/binding/ffi.py", line 153, in <module>
    raise OSError("Could not load shared object file: {}".format(_lib_name))
OSError: Could not load shared object file: libllvmlite.dylib
>>> import graspy
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/graspy-0.3.0-py3.8.egg/graspy/__init__.py", line 6, in <module>
    import graspy.inference
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/graspy-0.3.0-py3.8.egg/graspy/inference/__init__.py", line 2, in <module>
    from .latent_distribution_test import LatentDistributionTest
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/graspy-0.3.0-py3.8.egg/graspy/inference/latent_distribution_test.py", line 27, in <module>
    from hyppo.ksample import KSample
  File "<frozen importlib._bootstrap>", line 991, in _find_and_load
  File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 655, in _load_unlocked
  File "<frozen importlib._bootstrap>", line 618, in _load_backward_compatible
  File "<frozen zipimport>", line 259, in load_module
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/hyppo-0.2.1-py3.8.egg/hyppo/__init__.py", line 1, in <module>
  File "<frozen importlib._bootstrap>", line 991, in _find_and_load
  File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 655, in _load_unlocked
  File "<frozen importlib._bootstrap>", line 618, in _load_backward_compatible
  File "<frozen zipimport>", line 259, in load_module
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/hyppo-0.2.1-py3.8.egg/hyppo/discrim/__init__.py", line 1, in <module>
  File "<frozen importlib._bootstrap>", line 991, in _find_and_load
  File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 655, in _load_unlocked
  File "<frozen importlib._bootstrap>", line 618, in _load_backward_compatible
  File "<frozen zipimport>", line 259, in load_module
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/hyppo-0.2.1-py3.8.egg/hyppo/discrim/discrim_one_samp.py", line 4, in <module>
  File "<frozen importlib._bootstrap>", line 991, in _find_and_load
  File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 655, in _load_unlocked
  File "<frozen importlib._bootstrap>", line 618, in _load_backward_compatible
  File "<frozen zipimport>", line 259, in load_module
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/hyppo-0.2.1-py3.8.egg/hyppo/discrim/_utils.py", line 4, in <module>
  File "<frozen importlib._bootstrap>", line 991, in _find_and_load
  File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 655, in _load_unlocked
  File "<frozen importlib._bootstrap>", line 618, in _load_backward_compatible
  File "<frozen zipimport>", line 259, in load_module
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/hyppo-0.2.1-py3.8.egg/hyppo/tools/__init__.py", line 4, in <module>
  File "<frozen importlib._bootstrap>", line 991, in _find_and_load
  File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 655, in _load_unlocked
  File "<frozen importlib._bootstrap>", line 618, in _load_backward_compatible
  File "<frozen zipimport>", line 259, in load_module
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/hyppo-0.2.1-py3.8.egg/hyppo/tools/power.py", line 5, in <module>
  File "<frozen importlib._bootstrap>", line 991, in _find_and_load
  File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 655, in _load_unlocked
  File "<frozen importlib._bootstrap>", line 618, in _load_backward_compatible
  File "<frozen zipimport>", line 259, in load_module
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/hyppo-0.2.1-py3.8.egg/hyppo/independence/__init__.py", line 3, in <module>
  File "<frozen importlib._bootstrap>", line 991, in _find_and_load
  File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 655, in _load_unlocked
  File "<frozen importlib._bootstrap>", line 618, in _load_backward_compatible
  File "<frozen zipimport>", line 259, in load_module
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/hyppo-0.2.1-py3.8.egg/hyppo/independence/dcorr.py", line 2, in <module>
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/numba/__init__.py", line 14, in <module>
    from numba.core import config
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/numba/core/config.py", line 16, in <module>
    import llvmlite.binding as ll
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/llvmlite/binding/__init__.py", line 4, in <module>
    from .dylib import *
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/llvmlite/binding/dylib.py", line 3, in <module>
    from llvmlite.binding import ffi
  File "/Users/VS/opt/anaconda3/lib/python3.8/site-packages/llvmlite/binding/ffi.py", line 153, in <module>
    raise OSError("Could not load shared object file: {}".format(_lib_name))
OSError: Could not load shared object file: libllvmlite.dylib

Environment

Python version: 3.8.5
graspologic version: 0.3.0

Issue Analytics

State:
Created 2 years ago
Comments:10 (1 by maintainers)

Top GitHub Comments

1reaction

victoris93commented, Jun 22, 2021

@bdpedigo actually today I had to reinstall mvlearn since previous manipulations had somehow affected its dependency on graspy. So I decided to stick to the visualization functions provided by mvlearn. Once I removed it and installed it again with pip3, it went back to normal. Thanks for your help though! It’s just for now I really need mvlearn to work 😅

0reactions

daxprycecommented, Jun 22, 2021

Thanks for letting us know @victoris93!

In general, trying to troubleshoot a global(ish) environment is super challenging. For issues like this, we really would like to ask you to:

create a new virtual environment or conda equivalent
Install only graspologic
Replicate that you cannot import graspologic (or, specifically, the import statement that blew up catastrophically in your older environment)

That’s a good starting point for us as we start our search. If it’s doing it in the fresh environment, and it’s a python+os+platform configuration we support, then that is 100% on us (even if it’s a dependency of ours, we still have a responsibility to find a work around or replace the library, which… is not awesome, but we can’t let downstream deps make us stop working in a fresh install!)

If it’s not doing it in the fresh environment, then it gives us a place where we can compare the deltas in pip list (or conda equivalent (??? I don’t use conda so… my nomenclature is probably off)) between the two environments so we try to hypothesize some reasons for why it’s not working for you and try to work through them.

I’m going to mark this as closed for the moment, but if you get to a point where you want to try to dig into this some more, feel free to reopen this ticket, or open a new one and reference this one so we can try to pull together all the information you’ve already provided.

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