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conda test errors: test_matshow3d

See original GitHub issue

Describe the bug

======================================================================
FAIL: test_samples (tests.test_matshow3d.TestMatshow3d)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/Users/runner/work/MONAI/MONAI/tests/test_matshow3d.py", line 70, in test_samples
    np.testing.assert_allclose(comp["rms"], 30.786983, atol=1e-3, rtol=1e-3)
  File "/usr/local/miniconda/envs/monai/lib/python3.9/site-packages/numpy/testing/_private/utils.py", line 1530, in assert_allclose
    assert_array_compare(compare, actual, desired, err_msg=str(err_msg),
  File "/usr/local/miniconda/envs/monai/lib/python3.9/site-packages/numpy/testing/_private/utils.py", line 844, in assert_array_compare
    raise AssertionError(msg)
AssertionError: 
Not equal to tolerance rtol=0.001, atol=0.001

Mismatched elements: 1 / 1 (100%)
Max absolute difference: 4.74991119
Max relative difference: 0.1542831
 x: array(26.037072)
 y: array(30.786983)

======================================================================
FAIL: test_plot (tests.test_threadcontainer.TestThreadContainer)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/Users/runner/work/MONAI/MONAI/tests/test_threadcontainer.py", line 107, in test_plot
    self.assertIsNone(comp, comp)  # None indicates test passed
AssertionError: 'Error: Image files did not match.\n  RMS Value: 28.09905059190909\n  Expected:  \n    /Users/runner/work/MONAI/MONAI/tests/testing_data/threadcontainer_plot_test.png\n  Actual:    \n    /var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmpav42fn_w/threadcontainer_plot_test.png\n  Difference:\n    /var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmpav42fn_w/threadcontainer_plot_test-failed-diff.png\n  Tolerance: \n    0.05' is not None : Error: Image files did not match.
  RMS Value: 28.09905059190909
  Expected:  
    /Users/runner/work/MONAI/MONAI/tests/testing_data/threadcontainer_plot_test.png
  Actual:    
    /var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmpav42fn_w/threadcontainer_plot_test.png
  Difference:
    /var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmpav42fn_w/threadcontainer_plot_test-failed-diff.png
  Tolerance: 
    0.05

----------------------------------------------------------------------
Ran 5904 tests in 1950.197s

FAILED (failures=2, skipped=355)

Issue Analytics

State:
Created a year ago
Comments:8 (8 by maintainers)

Top GitHub Comments

2reactions

wylicommented, Mar 29, 2022

It’s possibly a version issue, the corresponding environment in a non-conda setup is here (example) https://github.com/Project-MONAI/MONAI/runs/5702401097?check_suite_focus=true

To debug, you can push to your fork with a temp branch and with the config modification to trigger the test like this https://github.com/Project-MONAI/MONAI/commit/238d883a92d11bea021ebd605837c9cdbfc78d2f

0reactions

wylicommented, Apr 1, 2022

appears to be addressed by https://github.com/Project-MONAI/MONAI/pull/4044

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