[Bug?]: yarn install error ENOENT: no such file or directory

Self-service

• I’d be willing to implement a fix

Describe the bug

Duplicate of https://github.com/yarnpkg/yarn/issues/4563:

➤ YN0001: │ Error: ENOENT: no such file or directory, chmod ‘/my-user/my-repository/node_modules/a-package/node_modules/another-package’

To reproduce

I don’t have a reproduction path, but there is more than enough information in https://github.com/yarnpkg/yarn/issues/4563, as this is a duplicate.

Environment

  System:
    OS: macOS 11.5.1
    CPU: (16) x64 Intel(R) Core(TM) i9-9980HK CPU @ 2.40GHz
  Binaries:
    Node: 14.17.0 - /private/var/folders/1s/p6w4cpg94cj2_kbxlkbfrqqw0000gn/T/xfs-1d0a0a1f/node
    Yarn: 2.4.1 - /private/var/folders/1s/p6w4cpg94cj2_kbxlkbfrqqw0000gn/T/xfs-1d0a0a1f/yarn
    npm: 6.14.13 - ~/.volta/tools/image/node/14.17.0/bin/npm
  npmPackages:
    jest: 26.6.3 => 26.6.

Additional context

No solutions of the duplicate issue helped me, like using yarn install instead of yarn, or doing it multiple times (unless 10 times is not enough).

We have seen this occurring in our repository elsewhere too, but not everytime.

[larixer]

@jgillick I need to write integration tests to change it to review status, hopefully I will find time to do this soon, perhaps this week

[penx]

We ran in to this issue with 3.2.0 due to Netlify not restoring our cache correctly (we think) and then getting this issue during install.

Confirmed that yarn set version from sources --branch 3467 fixes the issue for us when using nodeLinker: node-modules and nmHoistingLimits: workspaces.

Would be great to get #3467 merged!