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auditwheel repair requires patchelf >= 0.14.

See original GitHub issue

Get:63 http://deb.debian.org/debian bullseye/main amd64 patchelf amd64 0.12-1 [61.9 kB]

⬆️ this seems to be the issue. is this on my end?

then docker system prune and retried, but same outcome

tim@virtual:~/rails/opentopodata$ docker system prune

tim@virtual:~/rails/opentopodata$ docker system prune

WARNING! This will remove:

  - all stopped containers

  - all networks not used by at least one container

  - all dangling images

  - all dangling build cache



Are you sure you want to continue? [y/N] y

Deleted Containers:

36f0bbd34ec78607c80abc07158cf202ce1864a700c3355c186d84c9c8ecd716

f4cadf00732312bcff43e87481892fc64edb31b1cc18f7e8fd84ff10423d4984

94d6c5b56165081eaaffce56ad4f2e5bf79c82fe93cec8503271adc2fe460035



Deleted Images:

deleted: sha256:a929305d17fb4dad2cb010811e8fa8e00e63a71be0fc5632313060c74dc50650

deleted: sha256:509c766c41029b1e1dd193a9037e642acc31ed027dcbc7792bebd698d547c0be



Total reclaimed space: 363.5MB

tim@virtual:~/rails/opentopodata$ 

tim@virtual:~/rails/opentopodata$ 

tim@virtual:~/rails/opentopodata$ make build

docker build --tag opentopodata:`cat VERSION` --file docker/Dockerfile .

Sending build context to Docker daemon  33.02MB

Step 1/17 : FROM python:3.9.13-slim-bullseye as builder

 ---> 5da6ce3c33c6

Step 2/17 : RUN set -e &&     apt-get update &&     apt-get install -y --no-install-recommends         build-essential         gcc         libmemcached-dev         patchelf         python3.9-dev

 ---> Running in bd556d275925

Get:1 http://deb.debian.org/debian bullseye InRelease [116 kB]

Get:2 http://deb.debian.org/debian-security bullseye-security InRelease [48.4 kB]

Get:3 http://deb.debian.org/debian bullseye-updates InRelease [44.1 kB]

Get:4 http://deb.debian.org/debian bullseye/main amd64 Packages [8184 kB]

Get:5 http://deb.debian.org/debian-security bullseye-security/main amd64 Packages [194 kB]

Get:6 http://deb.debian.org/debian bullseye-updates/main amd64 Packages [14.6 kB]

Fetched 8600 kB in 1s (5803 kB/s)

Reading package lists...

Reading package lists...

Building dependency tree...

Reading state information...

The following additional packages will be installed:

  binutils binutils-common binutils-x86-64-linux-gnu bzip2 cpp cpp-10 dpkg-dev

  g++ g++-10 gcc-10 libasan6 libatomic1 libbinutils libc-dev-bin libc6

  libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libdpkg-perl libexpat1

  libexpat1-dev libgcc-10-dev libgdbm-compat4 libgomp1 libhashkit-dev

  libhashkit2 libisl23 libitm1 liblsan0 libmemcached11 libmemcachedutil2

  libmpc3 libmpdec3 libmpfr6 libnsl-dev libperl5.32 libpython3.9

  libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libquadmath0

  libsasl2-2 libsasl2-dev libsasl2-modules-db libstdc++-10-dev libtirpc-dev

  libtsan0 libubsan1 linux-libc-dev make media-types patch perl

  perl-modules-5.32 python3.9 python3.9-minimal xz-utils zlib1g zlib1g-dev

Suggested packages:

  binutils-doc bzip2-doc cpp-doc gcc-10-locales debian-keyring g++-multilib

  g++-10-multilib gcc-10-doc gcc-multilib manpages-dev autoconf automake

  libtool flex bison gdb gcc-doc gcc-10-multilib glibc-doc libc-l10n locales

  gnupg sensible-utils git bzr libstdc++-10-doc make-doc ed diffutils-doc

  perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl

  libtap-harness-archive-perl python3.9-venv python3.9-doc binfmt-support

Recommended packages:

  fakeroot gnupg libalgorithm-merge-perl manpages manpages-dev libc-devtools

  libnss-nis libnss-nisplus libfile-fcntllock-perl liblocale-gettext-perl

  libsasl2-modules

The following NEW packages will be installed:

  binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 cpp

  cpp-10 dpkg-dev g++ g++-10 gcc gcc-10 libasan6 libatomic1 libbinutils

  libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0

  libdpkg-perl libexpat1-dev libgcc-10-dev libgdbm-compat4 libgomp1

  libhashkit-dev libhashkit2 libisl23 libitm1 liblsan0 libmemcached-dev

  libmemcached11 libmemcachedutil2 libmpc3 libmpdec3 libmpfr6 libnsl-dev

  libperl5.32 libpython3.9 libpython3.9-dev libpython3.9-minimal

  libpython3.9-stdlib libquadmath0 libsasl2-2 libsasl2-dev libsasl2-modules-db

  libstdc++-10-dev libtirpc-dev libtsan0 libubsan1 linux-libc-dev make

  media-types patch patchelf perl perl-modules-5.32 python3.9 python3.9-dev

  python3.9-minimal xz-utils zlib1g-dev

The following packages will be upgraded:

  libc6 libexpat1 zlib1g

3 upgraded, 63 newly installed, 0 to remove and 11 not upgraded.

Need to get 84.6 MB of archives.

After this operation, 326 MB of additional disk space will be used.

Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u2 [2823 kB]

Get:2 http://deb.debian.org/debian bullseye-updates/main amd64 libc6 amd64 2.31-13+deb11u5 [2825 kB]

Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB]

Get:4 http://deb.debian.org/debian bullseye/main amd64 zlib1g amd64 1:1.2.11.dfsg-2+deb11u2 [91.4 kB]

Get:5 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u2 [4106 kB]

Get:6 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u2 [293 kB]

Get:7 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB]

Get:8 http://deb.debian.org/debian-security bullseye-security/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB]

Get:9 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB]

Get:10 http://deb.debian.org/debian bullseye/main amd64 bzip2 amd64 1.0.8-4 [49.3 kB]

Get:11 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB]

Get:12 http://deb.debian.org/debian bullseye/main amd64 xz-utils amd64 5.2.5-2.1~deb11u1 [220 kB]

Get:13 http://deb.debian.org/debian bullseye/main amd64 binutils-common amd64 2.35.2-2 [2220 kB]

Get:14 http://deb.debian.org/debian bullseye/main amd64 libbinutils amd64 2.35.2-2 [570 kB]

Get:15 http://deb.debian.org/debian bullseye/main amd64 libctf-nobfd0 amd64 2.35.2-2 [110 kB]

Get:16 http://deb.debian.org/debian bullseye/main amd64 libctf0 amd64 2.35.2-2 [53.2 kB]

Get:17 http://deb.debian.org/debian bullseye/main amd64 binutils-x86-64-linux-gnu amd64 2.35.2-2 [1809 kB]

Get:18 http://deb.debian.org/debian bullseye/main amd64 binutils amd64 2.35.2-2 [61.2 kB]

Get:19 http://deb.debian.org/debian bullseye-updates/main amd64 libc-dev-bin amd64 2.31-13+deb11u5 [276 kB]

Get:20 http://deb.debian.org/debian-security bullseye-security/main amd64 linux-libc-dev amd64 5.10.149-2 [1551 kB]

Get:21 http://deb.debian.org/debian bullseye/main amd64 libcrypt-dev amd64 1:4.4.18-4 [104 kB]

Get:22 http://deb.debian.org/debian bullseye/main amd64 libtirpc-dev amd64 1.3.1-1+deb11u1 [191 kB]

Get:23 http://deb.debian.org/debian bullseye/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB]

Get:24 http://deb.debian.org/debian bullseye-updates/main amd64 libc6-dev amd64 2.31-13+deb11u5 [2359 kB]

Get:25 http://deb.debian.org/debian bullseye/main amd64 libisl23 amd64 0.23-1 [676 kB]

Get:26 http://deb.debian.org/debian bullseye/main amd64 libmpfr6 amd64 4.1.0-3 [2012 kB]

Get:27 http://deb.debian.org/debian bullseye/main amd64 libmpc3 amd64 1.2.0-1 [45.0 kB]

Get:28 http://deb.debian.org/debian bullseye/main amd64 cpp-10 amd64 10.2.1-6 [8528 kB]

Get:29 http://deb.debian.org/debian bullseye/main amd64 cpp amd64 4:10.2.1-1 [19.7 kB]

Get:30 http://deb.debian.org/debian bullseye/main amd64 libcc1-0 amd64 10.2.1-6 [47.0 kB]

Get:31 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB]

Get:32 http://deb.debian.org/debian bullseye/main amd64 libitm1 amd64 10.2.1-6 [25.8 kB]

Get:33 http://deb.debian.org/debian bullseye/main amd64 libatomic1 amd64 10.2.1-6 [9008 B]

Get:34 http://deb.debian.org/debian bullseye/main amd64 libasan6 amd64 10.2.1-6 [2065 kB]

Get:35 http://deb.debian.org/debian bullseye/main amd64 liblsan0 amd64 10.2.1-6 [828 kB]

Get:36 http://deb.debian.org/debian bullseye/main amd64 libtsan0 amd64 10.2.1-6 [2000 kB]

Get:37 http://deb.debian.org/debian bullseye/main amd64 libubsan1 amd64 10.2.1-6 [777 kB]

Get:38 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB]

Get:39 http://deb.debian.org/debian bullseye/main amd64 libgcc-10-dev amd64 10.2.1-6 [2328 kB]

Get:40 http://deb.debian.org/debian bullseye/main amd64 gcc-10 amd64 10.2.1-6 [17.0 MB]

Get:41 http://deb.debian.org/debian bullseye/main amd64 gcc amd64 4:10.2.1-1 [5192 B]

Get:42 http://deb.debian.org/debian bullseye/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB]

Get:43 http://deb.debian.org/debian bullseye/main amd64 g++-10 amd64 10.2.1-6 [9380 kB]

Get:44 http://deb.debian.org/debian bullseye/main amd64 g++ amd64 4:10.2.1-1 [1644 B]

Get:45 http://deb.debian.org/debian bullseye/main amd64 make amd64 4.3-4.1 [396 kB]

Get:46 http://deb.debian.org/debian bullseye/main amd64 libdpkg-perl all 1.20.12 [1551 kB]

Get:47 http://deb.debian.org/debian bullseye/main amd64 patch amd64 2.7.6-7 [128 kB]

Get:48 http://deb.debian.org/debian bullseye/main amd64 dpkg-dev all 1.20.12 [2312 kB]

Get:49 http://deb.debian.org/debian bullseye/main amd64 build-essential amd64 12.9 [7704 B]

Get:50 http://deb.debian.org/debian-security bullseye-security/main amd64 libexpat1-dev amd64 2.2.10-2+deb11u5 [141 kB]

Get:51 http://deb.debian.org/debian bullseye/main amd64 libhashkit2 amd64 1.0.18-4.2 [46.2 kB]

Get:52 http://deb.debian.org/debian bullseye/main amd64 libhashkit-dev amd64 1.0.18-4.2 [36.7 kB]

Get:53 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB]

Get:54 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB]

Get:55 http://deb.debian.org/debian bullseye/main amd64 libmemcached11 amd64 1.0.18-4.2 [94.5 kB]

Get:56 http://deb.debian.org/debian bullseye/main amd64 libmemcachedutil2 amd64 1.0.18-4.2 [22.3 kB]

Get:57 http://deb.debian.org/debian bullseye/main amd64 libsasl2-dev amd64 2.1.27+dfsg-2.1+deb11u1 [281 kB]

Get:58 http://deb.debian.org/debian bullseye/main amd64 libmemcached-dev amd64 1.0.18-4.2 [251 kB]

Get:59 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB]

Get:60 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB]

Get:61 http://deb.debian.org/debian bullseye/main amd64 libpython3.9 amd64 3.9.2-1 [1691 kB]

Get:62 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-dev amd64 3.9.2-1 [4028 kB]

Get:63 http://deb.debian.org/debian bullseye/main amd64 patchelf amd64 0.12-1 [61.9 kB]

Get:64 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB]

Get:65 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB]

Get:66 http://deb.debian.org/debian bullseye/main amd64 python3.9-dev amd64 3.9.2-1 [515 kB]

debconf: delaying package configuration, since apt-utils is not installed

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Setting up libc6:amd64 (2.31-13+deb11u5) ...

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 ---> 59a80e612765

Step 3/17 : RUN pip config set global.disable-pip-version-check true &&     pip wheel --wheel-dir=/root/wheels uwsgi==2.0.19.1 &&     pip wheel --wheel-dir=/root/wheels regex==2021.11.10 &&     pip wheel --wheel-dir=/tmp/wheels pylibmc==1.6.1 &&     pip install --no-cache-dir auditwheel &&     auditwheel repair /tmp/wheels/pylibmc-*.whl -w /root/wheels --plat manylinux_2_27_x86_64

 ---> Running in 0b873bbcaeb0

Writing to /root/.config/pip/pip.conf

Collecting uwsgi==2.0.19.1

  Downloading uWSGI-2.0.19.1.tar.gz (803 kB)

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  Preparing metadata (setup.py): started

  Preparing metadata (setup.py): finished with status 'done'

Building wheels for collected packages: uwsgi

  Building wheel for uwsgi (setup.py): started

  Building wheel for uwsgi (setup.py): finished with status 'done'

  Created wheel for uwsgi: filename=uWSGI-2.0.19.1-cp39-cp39-linux_x86_64.whl size=510318 sha256=89e08f122446b5771ffea02d0a7129c51c8a38edcd1865261c2bebe894fad7e9

  Stored in directory: /root/.cache/pip/wheels/17/66/cf/112237fefe0b8011e4a481305ba799b696ece8590219bd527f

Successfully built uwsgi

Collecting regex==2021.11.10

  Downloading regex-2021.11.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (763 kB)

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Saved /root/wheels/regex-2021.11.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Collecting pylibmc==1.6.1

  Downloading pylibmc-1.6.1.tar.gz (64 kB)

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  Preparing metadata (setup.py): started

  Preparing metadata (setup.py): finished with status 'done'

Building wheels for collected packages: pylibmc

  Building wheel for pylibmc (setup.py): started

  Building wheel for pylibmc (setup.py): finished with status 'done'

  Created wheel for pylibmc: filename=pylibmc-1.6.1-cp39-cp39-linux_x86_64.whl size=34719 sha256=57bad210fba9b1fc7c836345d2d48af62c2d54490499f3b6748e32dcc15cd6a5

  Stored in directory: /root/.cache/pip/wheels/3c/07/69/ef98d2a15137c0196d1e9a0d27e01c7200f793491b83656755

Successfully built pylibmc

Collecting auditwheel

  Downloading auditwheel-5.2.1-py3-none-any.whl (53 kB)

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Collecting pyelftools>=0.24

  Downloading pyelftools-0.29-py2.py3-none-any.whl (174 kB)

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Installing collected packages: pyelftools, auditwheel

Successfully installed auditwheel-5.2.1 pyelftools-0.29

WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv

INFO:auditwheel.main_repair:Repairing pylibmc-1.6.1-cp39-cp39-linux_x86_64.whl

Traceback (most recent call last):

  File "/usr/local/bin/auditwheel", line 8, in <module>

    sys.exit(main())

  File "/usr/local/lib/python3.9/site-packages/auditwheel/main.py", line 59, in main

    rval = args.func(args, p)

  File "/usr/local/lib/python3.9/site-packages/auditwheel/main_repair.py", line 172, in execute

    patcher = Patchelf()

  File "/usr/local/lib/python3.9/site-packages/auditwheel/patcher.py", line 44, in __init__

    _verify_patchelf()

  File "/usr/local/lib/python3.9/site-packages/auditwheel/patcher.py", line 37, in _verify_patchelf

    raise ValueError(

ValueError: patchelf patchelf 0.12

 found. auditwheel repair requires patchelf >= 0.14.

The command '/bin/sh -c pip config set global.disable-pip-version-check true &&     pip wheel --wheel-dir=/root/wheels uwsgi==2.0.19.1 &&     pip wheel --wheel-dir=/root/wheels regex==2021.11.10 &&     pip wheel --wheel-dir=/tmp/wheels pylibmc==1.6.1 &&     pip install --no-cache-dir auditwheel &&     auditwheel repair /tmp/wheels/pylibmc-*.whl -w /root/wheels --plat manylinux_2_27_x86_64' returned a non-zero code: 1

make: *** [Makefile:5: build] Error 1