WARNING:root:Failed to get options via gdal-config (M1 mac)
See original GitHub issueHi there,
I’m running make build
on macOS (m1) 12.0.1 and encounter this issue:
#11 6.510 Collecting rasterio==1.2.9
#11 6.553 Downloading rasterio-1.2.9.tar.gz (2.3 MB)
#11 7.162 Installing build dependencies: started
#11 13.24 Installing build dependencies: finished with status 'done'
#11 13.24 Getting requirements to build wheel: started
#11 13.45 Getting requirements to build wheel: finished with status 'error'
#11 13.45 ERROR: Command errored out with exit status 1:
#11 13.45 command: /usr/local/bin/python /usr/local/lib/python3.7/site-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmp_b8p17k_
#11 13.45 cwd: /tmp/pip-install-rusm7ufj/rasterio_d6e3703bd238492fb428a60f0b4d1a47
#11 13.45 Complete output (2 lines):
#11 13.45 WARNING:root:Failed to get options via gdal-config: [Errno 2] No such file or directory: 'gdal-config': 'gdal-config'
#11 13.45 ERROR: A GDAL API version must be specified. Provide a path to gdal-config using a GDAL_CONFIG environment variable or use a GDAL_VERSION environment variable.
#11 13.45 ----------------------------------------
#11 13.45 WARNING: Discarding https://files.pythonhosted.org/packages/1f/70/4e7a789f4988955e4c381de80923e184f912683bbe6fc4a3a00c91efdf59/rasterio-1.2.9.tar.gz#sha256=012a4964d8db365be4fae0af9cbeba00e683e5904d5031e8ba42ccb6040cc887 (from https://pypi.org/simple/rasterio/) (requires-python:>=3.6). Command errored out with exit status 1: /usr/local/bin/python /usr/local/lib/python3.7/site-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmp_b8p17k_ Check the logs for full command output.
#11 13.45 ERROR: Could not find a version that satisfies the requirement rasterio==1.2.9 (from versions: 0.1, 0.2, 0.3, 0.4, 0.5, 0.5.1, 0.6, 0.7, 0.7.1, 0.7.2, 0.7.3, 0.8, 0.9, 0.10, 0.10.1, 0.11, 0.11.1, 0.12, 0.12.1, 0.13, 0.13.1, 0.13.2, 0.14, 0.14.1, 0.15, 0.15.1, 0.16, 0.17, 0.17.1, 0.18, 0.19.0, 0.19.1, 0.20.0, 0.21.0, 0.22.0, 0.23.0, 0.24.0, 0.24.1, 0.25.0, 0.26.0, 0.27.0, 0.28.0, 0.29.0, 0.30.0, 0.31.0, 0.32.0, 0.32.0.post1, 0.33.0, 0.34.0, 0.35.0, 0.35.0.post1, 0.35.1, 0.36.0, 1.0a1, 1.0a2, 1.0a3, 1.0a4, 1.0a6, 1.0a7, 1.0a8, 1.0a9, 1.0a10, 1.0a11, 1.0a12, 1.0b1, 1.0b2, 1.0b3, 1.0b4, 1.0rc1, 1.0rc2, 1.0rc3, 1.0rc4, 1.0rc5, 1.0.0, 1.0.1, 1.0.2, 1.0.3, 1.0.3.post1, 1.0.4, 1.0.5, 1.0.6, 1.0.7, 1.0.8, 1.0.9, 1.0.10, 1.0.11, 1.0.12, 1.0.13, 1.0.14, 1.0.15, 1.0.16, 1.0.17, 1.0.18, 1.0.20, 1.0.21, 1.0.22, 1.0.23, 1.0.24, 1.0.25, 1.0.26, 1.0.27, 1.0.28, 1.1b1, 1.1b2, 1.1b3, 1.1.0, 1.1.1, 1.1.2, 1.1.3, 1.1.4, 1.1.5, 1.1.6, 1.1.7, 1.1.8, 1.2a1, 1.2b1, 1.2b2, 1.2b3, 1.2b4, 1.2.0, 1.2.1, 1.2.2, 1.2.3, 1.2.4, 1.2.5, 1.2.6, 1.2.7, 1.2.8, 1.2.9, 1.2.10, 1.3a1, 1.3a2)
#11 13.46 ERROR: No matching distribution found for rasterio==1.2.9
------
executor failed running [/bin/sh -c pip install --no-index --no-cache-dir --disable-pip-version-check --find-links=/root/wheels uwsgi regex && pip install --no-cache-dir --disable-pip-version-check -r /app/requirements.txt && rm -rf /root/.cache/pip/* && rm root/wheels/* && rm /app/requirements.txt]: exit code: 1
make: *** [build] Error 1
Full logs
$ make build
docker build --tag opentopodata:`cat VERSION` --file docker/Dockerfile .
[+] Building 18.1s (11/14)
=> [internal] load build definition from Dockerfile 0.0s
=> => transferring dockerfile: 37B 0.0s
=> [internal] load .dockerignore 0.0s
=> => transferring context: 34B 0.0s
=> [internal] load metadata for docker.io/library/python:3.7.12-slim-buster 4.3s
=> [internal] load build context 0.0s
=> => transferring context: 5.39kB 0.0s
=> [builder 1/3] FROM docker.io/library/python:3.7.12-slim-buster@sha256:866b51113519f9022e2f432869d3e7d97b090b9853f4765dbf46394ac28d5a03 0.0s
=> CACHED [stage-1 2/8] RUN set -e && apt-get update && apt-get install -y --no-install-recommends nginx memcached supervisor && rm -rf /var/lib/apt/lists/* 0.0s
=> CACHED [builder 2/3] RUN set -e && apt-get update && apt-get install -y --no-install-recommends gcc python3.7-dev 0.0s
=> CACHED [builder 3/3] RUN pip wheel --wheel-dir=/root/wheels uwsgi==2.0.19.1 && pip wheel --wheel-dir=/root/wheels regex==2021.9.30 0.0s
=> CACHED [stage-1 3/8] COPY --from=builder /root/wheels /root/wheels 0.0s
=> CACHED [stage-1 4/8] COPY requirements.txt /app/requirements.txt 0.0s
=> ERROR [stage-1 5/8] RUN pip install --no-index --no-cache-dir --disable-pip-version-check --find-links=/root/wheels uwsgi regex && pip install --no-cache-dir --disable-pip-version-check -r /app/requirements.txt && rm -rf /root/.cache/pip/* && rm root/wheels/* && rm /app/requirements.txt 13.6s
------
> [stage-1 5/8] RUN pip install --no-index --no-cache-dir --disable-pip-version-check --find-links=/root/wheels uwsgi regex && pip install --no-cache-dir --disable-pip-version-check -r /app/requirements.txt && rm -rf /root/.cache/pip/* && rm root/wheels/* && rm /app/requirements.txt:
#11 1.033 Looking in links: /root/wheels
#11 1.040 Processing /root/wheels/uWSGI-2.0.19.1-cp37-cp37m-linux_aarch64.whl
#11 1.044 Processing /root/wheels/regex-2021.9.30-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
#11 1.066 Installing collected packages: uwsgi, regex
#11 1.157 Successfully installed regex-2021.9.30 uwsgi-2.0.19.1
#11 1.157 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
#11 1.536 Collecting affine==2.3.0
#11 1.706 Downloading affine-2.3.0-py2.py3-none-any.whl (15 kB)
#11 1.746 Collecting attrs==21.2.0
#11 1.773 Downloading attrs-21.2.0-py2.py3-none-any.whl (53 kB)
#11 1.839 Collecting black==21.9b0
#11 1.868 Downloading black-21.9b0-py3-none-any.whl (148 kB)
#11 1.944 Collecting certifi==2021.5.30
#11 1.980 Downloading certifi-2021.5.30-py2.py3-none-any.whl (145 kB)
#11 2.051 Collecting charset-normalizer==2.0.6
#11 2.082 Downloading charset_normalizer-2.0.6-py3-none-any.whl (37 kB)
#11 2.121 Collecting click==8.0.1
#11 2.147 Downloading click-8.0.1-py3-none-any.whl (97 kB)
#11 2.189 Collecting click-plugins==1.1.1
#11 2.215 Downloading click_plugins-1.1.1-py2.py3-none-any.whl (7.5 kB)
#11 2.266 Collecting cligj==0.7.2
#11 2.290 Downloading cligj-0.7.2-py3-none-any.whl (7.1 kB)
#11 2.632 Collecting coverage[toml]==6.0.1
#11 2.661 Downloading coverage-6.0.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (243 kB)
#11 2.726 Collecting flask==2.0.2
#11 2.764 Downloading Flask-2.0.2-py3-none-any.whl (95 kB)
#11 2.811 Collecting flask-caching==1.10.1
#11 2.836 Downloading Flask_Caching-1.10.1-py3-none-any.whl (34 kB)
#11 2.873 Collecting geographiclib==1.52
#11 2.898 Downloading geographiclib-1.52-py3-none-any.whl (38 kB)
#11 2.938 Collecting idna==3.2
#11 2.964 Downloading idna-3.2-py3-none-any.whl (59 kB)
#11 3.027 Collecting importlib-metadata==4.8.1
#11 3.052 Downloading importlib_metadata-4.8.1-py3-none-any.whl (17 kB)
#11 3.083 Collecting iniconfig==1.1.1
#11 3.128 Downloading iniconfig-1.1.1-py2.py3-none-any.whl (5.0 kB)
#11 3.160 Collecting itsdangerous==2.0.1
#11 3.200 Downloading itsdangerous-2.0.1-py3-none-any.whl (18 kB)
#11 3.241 Collecting jinja2==3.0.2
#11 3.282 Downloading Jinja2-3.0.2-py3-none-any.whl (133 kB)
#11 3.361 Collecting markupsafe==2.0.1
#11 3.384 Downloading MarkupSafe-2.0.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (26 kB)
#11 3.409 Collecting mypy-extensions==0.4.3
#11 3.441 Downloading mypy_extensions-0.4.3-py2.py3-none-any.whl (4.5 kB)
#11 3.736 Collecting numpy==1.21.2
#11 3.770 Downloading numpy-1.21.2-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (13.0 MB)
#11 4.474 Collecting packaging==21.0
#11 4.500 Downloading packaging-21.0-py3-none-any.whl (40 kB)
#11 4.544 Collecting pathspec==0.9.0
#11 4.575 Downloading pathspec-0.9.0-py2.py3-none-any.whl (31 kB)
#11 4.606 Collecting pep517==0.11.0
#11 4.640 Downloading pep517-0.11.0-py2.py3-none-any.whl (19 kB)
#11 4.702 Collecting pip-tools==6.3.0
#11 4.727 Downloading pip_tools-6.3.0-py3-none-any.whl (47 kB)
#11 4.762 Collecting platformdirs==2.4.0
#11 4.793 Downloading platformdirs-2.4.0-py3-none-any.whl (14 kB)
#11 4.843 Collecting pluggy==1.0.0
#11 4.871 Downloading pluggy-1.0.0-py2.py3-none-any.whl (13 kB)
#11 4.898 Collecting polyline==1.4.0
#11 4.934 Downloading polyline-1.4.0-py2.py3-none-any.whl (4.4 kB)
#11 4.986 Collecting py==1.10.0
#11 5.015 Downloading py-1.10.0-py2.py3-none-any.whl (97 kB)
#11 5.055 Collecting pylibmc==1.6.1
#11 5.081 Downloading pylibmc-1.6.1.tar.gz (64 kB)
#11 5.651 Collecting pyparsing==2.4.7
#11 5.684 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB)
#11 5.785 Collecting pyproj==3.2.1
#11 5.822 Downloading pyproj-3.2.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (6.1 MB)
#11 6.103 Collecting pytest==6.2.5
#11 6.146 Downloading pytest-6.2.5-py3-none-any.whl (280 kB)
#11 6.205 Collecting pytest-cov==3.0.0
#11 6.243 Downloading pytest_cov-3.0.0-py3-none-any.whl (20 kB)
#11 6.313 Collecting pyyaml==5.4.1
#11 6.347 Downloading PyYAML-5.4.1-cp37-cp37m-manylinux2014_aarch64.whl (716 kB)
#11 6.510 Collecting rasterio==1.2.9
#11 6.553 Downloading rasterio-1.2.9.tar.gz (2.3 MB)
#11 7.162 Installing build dependencies: started
#11 13.24 Installing build dependencies: finished with status 'done'
#11 13.24 Getting requirements to build wheel: started
#11 13.45 Getting requirements to build wheel: finished with status 'error'
#11 13.45 ERROR: Command errored out with exit status 1:
#11 13.45 command: /usr/local/bin/python /usr/local/lib/python3.7/site-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmp_b8p17k_
#11 13.45 cwd: /tmp/pip-install-rusm7ufj/rasterio_d6e3703bd238492fb428a60f0b4d1a47
#11 13.45 Complete output (2 lines):
#11 13.45 WARNING:root:Failed to get options via gdal-config: [Errno 2] No such file or directory: 'gdal-config': 'gdal-config'
#11 13.45 ERROR: A GDAL API version must be specified. Provide a path to gdal-config using a GDAL_CONFIG environment variable or use a GDAL_VERSION environment variable.
#11 13.45 ----------------------------------------
#11 13.45 WARNING: Discarding https://files.pythonhosted.org/packages/1f/70/4e7a789f4988955e4c381de80923e184f912683bbe6fc4a3a00c91efdf59/rasterio-1.2.9.tar.gz#sha256=012a4964d8db365be4fae0af9cbeba00e683e5904d5031e8ba42ccb6040cc887 (from https://pypi.org/simple/rasterio/) (requires-python:>=3.6). Command errored out with exit status 1: /usr/local/bin/python /usr/local/lib/python3.7/site-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmp_b8p17k_ Check the logs for full command output.
#11 13.45 ERROR: Could not find a version that satisfies the requirement rasterio==1.2.9 (from versions: 0.1, 0.2, 0.3, 0.4, 0.5, 0.5.1, 0.6, 0.7, 0.7.1, 0.7.2, 0.7.3, 0.8, 0.9, 0.10, 0.10.1, 0.11, 0.11.1, 0.12, 0.12.1, 0.13, 0.13.1, 0.13.2, 0.14, 0.14.1, 0.15, 0.15.1, 0.16, 0.17, 0.17.1, 0.18, 0.19.0, 0.19.1, 0.20.0, 0.21.0, 0.22.0, 0.23.0, 0.24.0, 0.24.1, 0.25.0, 0.26.0, 0.27.0, 0.28.0, 0.29.0, 0.30.0, 0.31.0, 0.32.0, 0.32.0.post1, 0.33.0, 0.34.0, 0.35.0, 0.35.0.post1, 0.35.1, 0.36.0, 1.0a1, 1.0a2, 1.0a3, 1.0a4, 1.0a6, 1.0a7, 1.0a8, 1.0a9, 1.0a10, 1.0a11, 1.0a12, 1.0b1, 1.0b2, 1.0b3, 1.0b4, 1.0rc1, 1.0rc2, 1.0rc3, 1.0rc4, 1.0rc5, 1.0.0, 1.0.1, 1.0.2, 1.0.3, 1.0.3.post1, 1.0.4, 1.0.5, 1.0.6, 1.0.7, 1.0.8, 1.0.9, 1.0.10, 1.0.11, 1.0.12, 1.0.13, 1.0.14, 1.0.15, 1.0.16, 1.0.17, 1.0.18, 1.0.20, 1.0.21, 1.0.22, 1.0.23, 1.0.24, 1.0.25, 1.0.26, 1.0.27, 1.0.28, 1.1b1, 1.1b2, 1.1b3, 1.1.0, 1.1.1, 1.1.2, 1.1.3, 1.1.4, 1.1.5, 1.1.6, 1.1.7, 1.1.8, 1.2a1, 1.2b1, 1.2b2, 1.2b3, 1.2b4, 1.2.0, 1.2.1, 1.2.2, 1.2.3, 1.2.4, 1.2.5, 1.2.6, 1.2.7, 1.2.8, 1.2.9, 1.2.10, 1.3a1, 1.3a2)
#11 13.46 ERROR: No matching distribution found for rasterio==1.2.9
------
executor failed running [/bin/sh -c pip install --no-index --no-cache-dir --disable-pip-version-check --find-links=/root/wheels uwsgi regex && pip install --no-cache-dir --disable-pip-version-check -r /app/requirements.txt && rm -rf /root/.cache/pip/* && rm root/wheels/* && rm /app/requirements.txt]: exit code: 1
make: *** [build] Error 1
Any idea of what’s going on? How could I help you help me fix this? 😉
Thanks!
Issue Analytics
- State:
- Created 2 years ago
- Comments:13 (13 by maintainers)
Top Results From Across the Web
pip install gdal failing on macOS · Issue #2166 - GitHub
Expected behavior and actual behavior. As of the new release (3.0.3), pip install gdal is failing for me. Error is $ pip install...
Read more >Unable to install gdal in python 3.6.1 in macos Sierra
1) Install GDAL framework using dmg installer for MAC [GDAL MAC ... 2) Add gdal-config folder to your path and get your version:....
Read more >Python GDAL package missing header file when installing via ...
selimnairb's answer is close but you wont have the headers unless you've installed libgdal-dev: sudo apt-get install libgdal-dev.
Read more >Dockerfile working on Linux but not on Mac M1 - Reddit
The main issue is with a package called Rasterio.On Mac it throws me: WARNING:root:Failed to get options via gdal-config: [Errno 2] No such...
Read more >Spatial Data Science: Installing GDAL on Windows and MacOS
It will open a command prompt/terminal with the GDAL environment set up. again, invoke gdalinfo --version to verify that it has been installed....
Read more >Top Related Medium Post
No results found
Top Related StackOverflow Question
No results found
Troubleshoot Live Code
Lightrun enables developers to add logs, metrics and snapshots to live code - no restarts or redeploys required.
Start FreeTop Related Reddit Thread
No results found
Top Related Hackernoon Post
No results found
Top Related Tweet
No results found
Top Related Dev.to Post
No results found
Top Related Hashnode Post
No results found
Top GitHub Comments
Thanks for your help!
Ah, I missed that you’re on an M1 mac, I imagine that is the issue.
I don’t have a macbook to test on, and I don’t quite understand how M1, docker and rosetta all work together. I’m surprised rosetta didn’t work.
I know rasterio doesn’t have wheels for M1s (https://github.com/rasterio/rasterio-wheels/issues/69). Even on linux installing gdal and proj is a headache, which is why I went the rasterio route.
This Dockerfile works for me on linux (it builds and the tests pass): on my linux machine it pulls the rasterio wheel of course, but if the base image works on m1 that should have the dependencies needed to build rasterio
Otherwise you could try running without docker using homebrew and/or conda.