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ants.build_template transforms in object?

See original GitHub issue

Is your feature request related to a problem? Please describe. I used ants.build_template but I can’t seem to find the transforms from the input images to the template in the output object.

For example, when I run:

import ants
image1=ants.image_read('/Users/vincent/Data/tmp/sub-A_ses-01_T1w.nii.gz')
image2=ants.image_read('/Users/vincent/Data/tmp/sub-A_ses-02_T1w.nii.gz')
timage = ants.build_template(image_list = (image1, image2))

I am looking in the timage object for the affine and non-linear transformations, but can’t find them. Should they be present in this object, and if so, under which variable?

Issue Analytics

  • State:closed
  • Created 3 years ago
  • Comments:11 (6 by maintainers)

github_iconTop GitHub Comments

1reaction
stnavacommented, Apr 16, 2020

yes - that is the typical workflow. let’s suppose you have 10,000 images.

  • build a template from 100 of them, randomly selected

  • warp all images in the population to the template

does your application fit into this workflow?

0reactions
vnckpplcommented, Apr 17, 2020

Yes, it does. Thanks!

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