[SUPPORT] NotSerializeableException glue2.0 - spark 2.4.3, hudi-spark-bundle_2.11-0.11.0.jar
See original GitHub issueDescribe the problem you faced
I am getting a NotSerializeableException when doing an initial upsert into a hudi table.
Running locally with spark ( 2.4.7 /2.4.6 ) works fine. Running in EMR with spark 2.4.6 works fine.
To Reproduce
Steps to reproduce the behavior:
- Read from an existing glue table ( non hudi)
- Read from destination glue table (hudi)
- Apply join logic for existing glue table to apply some transformation
- Upsert into hudi table
Expected behavior
Upsert into hudi table occurs without error
Environment Description
-
Hudi version :hudi-spark-bundle_2.11-0.11.0.jar
-
Spark version :2.4.3
-
Hive version :glue
-
Hadoop version :glue 2.0
-
Storage (HDFS/S3/GCS…) :s3
-
Running on Docker? (yes/no) :
Additional context
Stacktrace
: org.apache.spark.SparkException: Job aborted due to stage failure: Failed to serialize task 3752, not attempting to retry it. Exception during serialization: java.io.NotSerializableException: org.apache.hadoop.fs.Path
Serialization stack:
- object not serializable (class: org.apache.hadoop.fs.Path, value: s3://someprefix/sometable)
- element of array (index: 0)
- array (class [Ljava.lang.Object;, size 1)
- field (class: scala.collection.mutable.WrappedArray$ofRef, name: array, type: class [Ljava.lang.Object;)
- object (class scala.collection.mutable.WrappedArray$ofRef, WrappedArray(s3://someprefix/sometable))
- writeObject data (class: org.apache.spark.rdd.ParallelCollectionPartition)
- object (class org.apache.spark.rdd.ParallelCollectionPartition, org.apache.spark.rdd.ParallelCollectionPartition@33e4)
- field (class: org.apache.spark.scheduler.ResultTask, name: partition, type: interface org.apache.spark.Partition)
- object (class org.apache.spark.scheduler.ResultTask, ResultTask(114, 0))
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1889)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1877)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1876)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1876)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:926)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:926)
at scala.Option.foreach(Option.scala:257)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:926)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2110)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2059)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2048)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:737)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2061)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2082)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2101)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2126)
at org.apache.spark.rdd.RDD$$anonfun$collect$1.apply(RDD.scala:945)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:363)
at org.apache.spark.rdd.RDD.collect(RDD.scala:944)
at org.apache.spark.api.java.JavaRDDLike$class.collect(JavaRDDLike.scala:361)
at org.apache.spark.api.java.AbstractJavaRDDLike.collect(JavaRDDLike.scala:45)
at org.apache.hudi.client.common.HoodieSparkEngineContext.map(HoodieSparkEngineContext.java:103)
at org.apache.hudi.metadata.HoodieBackedTableMetadataWriter.listAllPartitions(HoodieBackedTableMetadataWriter.java:621)
at org.apache.hudi.metadata.HoodieBackedTableMetadataWriter.initialCommit(HoodieBackedTableMetadataWriter.java:1054)
at org.apache.hudi.metadata.HoodieBackedTableMetadataWriter.initializeFromFilesystem(HoodieBackedTableMetadataWriter.java:547)
at org.apache.hudi.metadata.HoodieBackedTableMetadataWriter.initializeIfNeeded(HoodieBackedTableMetadataWriter.java:380)
at org.apache.hudi.metadata.SparkHoodieBackedTableMetadataWriter.initialize(SparkHoodieBackedTableMetadataWriter.java:120)
at org.apache.hudi.metadata.HoodieBackedTableMetadataWriter.<init>(HoodieBackedTableMetadataWriter.java:170)
at org.apache.hudi.metadata.SparkHoodieBackedTableMetadataWriter.<init>(SparkHoodieBackedTableMetadataWriter.java:89)
at org.apache.hudi.metadata.SparkHoodieBackedTableMetadataWriter.create(SparkHoodieBackedTableMetadataWriter.java:75)
at org.apache.hudi.client.SparkRDDWriteClient.initializeMetadataTable(SparkRDDWriteClient.java:448)
at org.apache.hudi.client.SparkRDDWriteClient.doInitTable(SparkRDDWriteClient.java:433)
at org.apache.hudi.client.BaseHoodieWriteClient.initTable(BaseHoodieWriteClient.java:1462)
at org.apache.hudi.client.BaseHoodieWriteClient.initTable(BaseHoodieWriteClient.java:1496)
at org.apache.hudi.client.SparkRDDWriteClient.upsert(SparkRDDWriteClient.java:154)
at org.apache.hudi.DataSourceUtils.doWriteOperation(DataSourceUtils.java:213)
at org.apache.hudi.HoodieSparkSqlWriter$.write(HoodieSparkSqlWriter.scala:304)
at org.apache.hudi.DefaultSource.createRelation(DefaultSource.scala:163)
at org.apache.spark.sql.execution.datasources.SaveIntoDataSourceCommand.run(SaveIntoDataSourceCommand.scala:45)
at org.apache.spark.sql.execution.command.ExecutedCommandExec.sideEffectResult$lzycompute(commands.scala:70)
at org.apache.spark.sql.execution.command.ExecutedCommandExec.sideEffectResult(commands.scala:68)
at org.apache.spark.sql.execution.command.ExecutedCommandExec.doExecute(commands.scala:86)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:131)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:127)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$executeQuery$1.apply(SparkPlan.scala:155)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:152)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:127)
at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:80)
at org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:80)
at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:676)
at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:676)
at org.apache.spark.sql.execution.SQLExecution$$anonfun$withNewExecutionId$1.apply(SQLExecution.scala:78)
at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:125)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:73)
at org.apache.spark.sql.DataFrameWriter.runCommand(DataFrameWriter.scala:676)
at org.apache.spark.sql.DataFrameWriter.saveToV1Source(DataFrameWriter.scala:285)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:271)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:229)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:282)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:238)
at java.lang.Thread.run(Thread.java:750)```
Issue Analytics
- State:
- Created a year ago
- Comments:11 (6 by maintainers)
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Top GitHub Comments
using the aws jars that you have listed above, I am running into other issues w/ EMR and open source spark. so, have to try out w/ glue only. may I know the link to docker image for glue for 2.0? from teh docs, for 3.0 its amazon/aws-glue-libs:glue_libs_3.0.0_image_01.
btw, I can do a pointed fix that you are encountering. but have a hunch there could be other places where we might have such issues. So, if I can reproduce myself, we can fix entire flow.
@mikeashley87 Path not serializable is a known issue which was fixed in https://github.com/apache/hudi/commit/7a9d48d126b1474f1bb7cfbe8b1c0b0391ef49d2 The fix was released in Hudi version 0.12.0. Can you please try with that?