Traceplot parity
See original GitHub issueIs it intentional to have a different traceplot from pymc3? Each element of an RV with shape > 1 gets a plot in arviz
, while they are all the same for pymc3
.
Explicitly, with eight schools (I only capture the first few plots from arviz):
J = 8
y = np.array([28, 8, -3, 7, -1, 1, 18, 12])
sigma = np.array([15, 10, 16, 11, 9, 11, 10, 18])
with pm.Model() as hierarchical:
eta = pm.Normal('eta', 0, 1, shape=J)
mu = pm.Normal('mu', 0, sd=1e6)
tau = pm.HalfCauchy('tau', 5)
theta = pm.Deterministic('theta', mu + tau*eta)
obs = pm.Normal('obs', theta, sd=sigma, observed=y)
trace_h = pm.sample(1000)
Issue Analytics
- State:
- Created 5 years ago
- Comments:13 (13 by maintainers)
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Advocating for returning to the pymc3 way by default. It is much worse UX to take forever and then break, rather than displaying a crowded plot which might trigger a user to look at the docs to find that option.
One difficulty with combined plots (I prefer them in most cases) is the overlay of the chains on the right. Maybe, they should get
alpha=1/ndim
or so.