Stuck on an issue?
Lightrun Answers was designed to reduce the constant googling that comes with debugging 3rd party libraries. It collects links to all the places you might be looking at while hunting down a tough bug.
And, if you’re still stuck at the end, we’re happy to hop on a call to see how we can help out.
Multiple test failures in Python 3
See original GitHub issueLog from running astropy.test():
====================================================== FAILURES =======================================================
_______________________________________________ test_simple_data[True] ________________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_simple_data_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_simple_data(parallel, read_basic):
"""
Make sure the fast reader works with basic input data.
"""
> table = read_basic("A B C\n1 2 3\n4 5 6", parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:132:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_______________________________________________ test_simple_data[False] _______________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_simple_data_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_simple_data(parallel, read_basic):
"""
Make sure the fast reader works with basic input data.
"""
> table = read_basic("A B C\n1 2 3\n4 5 6", parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:132:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
______________________________________________ test_supplied_names[True] ______________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...of-svance/pytest-0/test_supplied_names_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_supplied_names(parallel, read_basic):
"""
If passed as a parameter, names should replace any
column names found in the header.
"""
> table = read_basic("A B C\n1 2 3\n4 5 6", names=('X', 'Y', 'Z'), parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:156:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_____________________________________________ test_supplied_names[False] ______________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...f-svance/pytest-0/test_supplied_names_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_supplied_names(parallel, read_basic):
"""
If passed as a parameter, names should replace any
column names found in the header.
"""
> table = read_basic("A B C\n1 2 3\n4 5 6", names=('X', 'Y', 'Z'), parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:156:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
________________________________________________ test_no_header[True] _________________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_no_header_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
read_no_header = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...-svance/pytest-0/test_no_header_True_0'), format='no_header', Reader=<class 'astropy.io.ascii.fastbasic.FastNoHeader'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_no_header(parallel, read_basic, read_no_header):
"""
The header should not be read when header_start=None. Unless names is
passed, the column names should be auto-generated.
"""
# Cannot set header_start=None for basic format
with pytest.raises(ValueError):
read_basic("A B C\n1 2 3\n4 5 6", header_start=None, data_start=0, parallel=parallel)
> t2 = read_no_header("A B C\n1 2 3\n4 5 6", parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:171:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
________________________________________________ test_no_header[False] ________________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_no_header_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
read_no_header = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...svance/pytest-0/test_no_header_False_0'), format='no_header', Reader=<class 'astropy.io.ascii.fastbasic.FastNoHeader'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_no_header(parallel, read_basic, read_no_header):
"""
The header should not be read when header_start=None. Unless names is
passed, the column names should be auto-generated.
"""
# Cannot set header_start=None for basic format
with pytest.raises(ValueError):
read_basic("A B C\n1 2 3\n4 5 6", header_start=None, data_start=0, parallel=parallel)
> t2 = read_no_header("A B C\n1 2 3\n4 5 6", parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:171:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_________________________________________ test_no_header_supplied_names[True] _________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...ance/pytest-0/test_no_header_supplied_names_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
read_no_header = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...test-0/test_no_header_supplied_names_0'), format='no_header', Reader=<class 'astropy.io.ascii.fastbasic.FastNoHeader'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_no_header_supplied_names(parallel, read_basic, read_no_header):
"""
If header_start=None and names is passed as a parameter, header
data should not be read and names should be used instead.
"""
table = read_no_header("A B C\n1 2 3\n4 5 6",
> names=('X', 'Y', 'Z'), parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:183:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
________________________________________ test_no_header_supplied_names[False] _________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...ance/pytest-0/test_no_header_supplied_names_1'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
read_no_header = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...test-0/test_no_header_supplied_names_1'), format='no_header', Reader=<class 'astropy.io.ascii.fastbasic.FastNoHeader'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_no_header_supplied_names(parallel, read_basic, read_no_header):
"""
If header_start=None and names is passed as a parameter, header
data should not be read and names should be used instead.
"""
table = read_no_header("A B C\n1 2 3\n4 5 6",
> names=('X', 'Y', 'Z'), parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:183:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_________________________________________________ test_comment[True] __________________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_comment_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_comment(parallel, read_basic):
"""
Make sure that line comments are ignored by the C reader.
"""
> table = read_basic("# comment\nA B C\n # another comment\n1 2 3\n4 5 6", parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:193:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_________________________________________________ test_comment[False] _________________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_comment_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_comment(parallel, read_basic):
"""
Make sure that line comments are ignored by the C reader.
"""
> table = read_basic("# comment\nA B C\n # another comment\n1 2 3\n4 5 6", parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:193:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_______________________________________________ test_empty_lines[True] ________________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_empty_lines_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_empty_lines(parallel, read_basic):
"""
Make sure that empty lines are ignored by the C reader.
"""
> table = read_basic("\n\nA B C\n1 2 3\n\n\n4 5 6\n\n\n\n", parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:203:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_______________________________________________ test_empty_lines[False] _______________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_empty_lines_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_empty_lines(parallel, read_basic):
"""
Make sure that empty lines are ignored by the C reader.
"""
> table = read_basic("\n\nA B C\n1 2 3\n\n\n4 5 6\n\n\n\n", parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:203:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
____________________________________________ test_lstrip_whitespace[True] _____________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...svance/pytest-0/test_lstrip_whitespace_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_lstrip_whitespace(parallel, read_basic):
"""
Test to make sure the reader ignores whitespace at the beginning of fields.
"""
text = """
1, 2, \t3
A,\t\t B, C
a, b, c
""" + ' \n'
> table = read_basic(text, delimiter=',', parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:219:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
____________________________________________ test_lstrip_whitespace[False] ____________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...vance/pytest-0/test_lstrip_whitespace_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_lstrip_whitespace(parallel, read_basic):
"""
Test to make sure the reader ignores whitespace at the beginning of fields.
"""
text = """
1, 2, \t3
A,\t\t B, C
a, b, c
""" + ' \n'
> table = read_basic(text, delimiter=',', parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:219:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
____________________________________________ test_rstrip_whitespace[True] _____________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...svance/pytest-0/test_rstrip_whitespace_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_rstrip_whitespace(parallel, read_basic):
"""
Test to make sure the reader ignores whitespace at the end of fields.
"""
text = ' 1 ,2 \t,3 \nA\t,B ,C\t \t \n \ta ,b , c \n'
> table = read_basic(text, delimiter=',', parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:230:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
____________________________________________ test_rstrip_whitespace[False] ____________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...vance/pytest-0/test_rstrip_whitespace_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_rstrip_whitespace(parallel, read_basic):
"""
Test to make sure the reader ignores whitespace at the end of fields.
"""
text = ' 1 ,2 \t,3 \nA\t,B ,C\t \t \n \ta ,b , c \n'
> table = read_basic(text, delimiter=',', parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:230:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
________________________________________________ test_conversion[True] ________________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_conversion_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_conversion(parallel, read_basic):
"""
The reader should try to convert each column to ints. If this fails, the
reader should try to convert to floats. Failing this, it should fall back
to strings.
"""
text = """
A B C D E
1 a 3 4 5
2. 1 9 10 -5.3e4
4 2 -12 .4 six
"""
> table = read_basic(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:248:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_______________________________________________ test_conversion[False] ________________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_conversion_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_conversion(parallel, read_basic):
"""
The reader should try to convert each column to ints. If this fails, the
reader should try to convert to floats. Failing this, it should fall back
to strings.
"""
text = """
A B C D E
1 a 3 4 5
2. 1 9 10 -5.3e4
4 2 -12 .4 six
"""
> table = read_basic(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:248:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
________________________________________________ test_delimiter[True] _________________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_delimiter_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_delimiter(parallel, read_basic):
"""
Make sure that different delimiters work as expected.
"""
text = """
COL1 COL2 COL3
1 A -1
2 B -2
"""
expected = Table([[1, 2], ['A', 'B'], [-1, -2]], names=('COL1', 'COL2', 'COL3'))
for sep in ' ,\t#;':
> table = read_basic(text.replace(' ', sep), delimiter=sep, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:269:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
________________________________________________ test_delimiter[False] ________________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_delimiter_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_delimiter(parallel, read_basic):
"""
Make sure that different delimiters work as expected.
"""
text = """
COL1 COL2 COL3
1 A -1
2 B -2
"""
expected = Table([[1, 2], ['A', 'B'], [-1, -2]], names=('COL1', 'COL2', 'COL3'))
for sep in ' ,\t#;':
> table = read_basic(text.replace(' ', sep), delimiter=sep, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:269:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
______________________________________________ test_include_names[True] _______________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_include_names_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_include_names(parallel, read_basic):
"""
If include_names is not None, the parser should read only those columns in include_names.
"""
> table = read_basic("A B C D\n1 2 3 4\n5 6 7 8", include_names=['A', 'D'], parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:278:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
______________________________________________ test_include_names[False] ______________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...of-svance/pytest-0/test_include_names_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_include_names(parallel, read_basic):
"""
If include_names is not None, the parser should read only those columns in include_names.
"""
> table = read_basic("A B C D\n1 2 3 4\n5 6 7 8", include_names=['A', 'D'], parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:278:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
______________________________________________ test_exclude_names[True] _______________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_exclude_names_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_exclude_names(parallel, read_basic):
"""
If exclude_names is not None, the parser should exclude the columns in exclude_names.
"""
> table = read_basic("A B C D\n1 2 3 4\n5 6 7 8", exclude_names=['A', 'D'], parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:288:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
______________________________________________ test_exclude_names[False] ______________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...of-svance/pytest-0/test_exclude_names_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_exclude_names(parallel, read_basic):
"""
If exclude_names is not None, the parser should exclude the columns in exclude_names.
"""
> table = read_basic("A B C D\n1 2 3 4\n5 6 7 8", exclude_names=['A', 'D'], parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:288:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
__________________________________________ test_include_exclude_names[True] ___________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...ance/pytest-0/test_include_exclude_names_Tru0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_include_exclude_names(parallel, read_basic):
"""
Make sure that include_names is applied before exclude_names if both are specified.
"""
text = """
A B C D E F G H
1 2 3 4 5 6 7 8
9 10 11 12 13 14 15 16
"""
table = read_basic(text, include_names=['A', 'B', 'D', 'F', 'H'],
> exclude_names=['B', 'F'], parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:304:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
__________________________________________ test_include_exclude_names[False] __________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...ance/pytest-0/test_include_exclude_names_Fal0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_include_exclude_names(parallel, read_basic):
"""
Make sure that include_names is applied before exclude_names if both are specified.
"""
text = """
A B C D E F G H
1 2 3 4 5 6 7 8
9 10 11 12 13 14 15 16
"""
table = read_basic(text, include_names=['A', 'B', 'D', 'F', 'H'],
> exclude_names=['B', 'F'], parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:304:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
______________________________________________ test_quoted_fields[False] ______________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...of-svance/pytest-0/test_quoted_fields_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_quoted_fields(parallel, read_basic):
"""
The character quotechar (default '"') should denote the start of a field which can
contain the field delimiter and newlines.
"""
if parallel:
pytest.xfail("Multiprocessing can fail with quoted fields")
text = """
"A B" C D
1.5 2.1 -37.1
a b " c
d"
"""
> table = read_basic(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:323:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_____________________________________________ test_not_enough_cols[True] ______________________________________________
parallel = True
read_csv = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_not_enough_cols_True_0'), format='csv', Reader=<class 'astropy.io.ascii.fastbasic.FastCsv'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_not_enough_cols(parallel, read_csv):
"""
If a row does not have enough columns, the FastCsv reader should add empty
fields while the FastBasic reader should raise an error.
"""
text = """
A,B,C
1,2,3
4,5
6,7,8
"""
> table = read_csv(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:393:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_____________________________________________ test_not_enough_cols[False] _____________________________________________
parallel = False
read_csv = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_not_enough_cols_False_0'), format='csv', Reader=<class 'astropy.io.ascii.fastbasic.FastCsv'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_not_enough_cols(parallel, read_csv):
"""
If a row does not have enough columns, the FastCsv reader should add empty
fields while the FastBasic reader should raise an error.
"""
text = """
A,B,C
1,2,3
4,5
6,7,8
"""
> table = read_csv(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:393:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_________________________________________________ test_data_end[True] _________________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_data_end_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
read_rdb = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_data_end_True_0'), format='rdb', Reader=<class 'astropy.io.ascii.fastbasic.FastRdb'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_data_end(parallel, read_basic, read_rdb):
"""
The parameter data_end should specify where data reading ends.
"""
text = """
A B C
1 2 3
4 5 6
7 8 9
10 11 12
"""
> table = read_basic(text, data_end=3, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:413:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
________________________________________________ test_data_end[False] _________________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_data_end_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
read_rdb = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_data_end_False_0'), format='rdb', Reader=<class 'astropy.io.ascii.fastbasic.FastRdb'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_data_end(parallel, read_basic, read_rdb):
"""
The parameter data_end should specify where data reading ends.
"""
text = """
A B C
1 2 3
4 5 6
7 8 9
10 11 12
"""
> table = read_basic(text, data_end=3, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:413:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_________________________________________________ test_inf_nan[True] __________________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_inf_nan_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_inf_nan(parallel, read_basic):
"""
Test that inf and nan-like values are correctly parsed on all platforms.
Regression test for https://github.com/astropy/astropy/pull/3525
"""
text = dedent("""\
A
nan
+nan
-nan
inf
infinity
+inf
+infinity
-inf
-infinity
""")
expected = Table({'A': [np.nan, np.nan, np.nan,
np.inf, np.inf, np.inf, np.inf,
-np.inf, -np.inf]})
> table = read_basic(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:469:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_________________________________________________ test_inf_nan[False] _________________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_inf_nan_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_inf_nan(parallel, read_basic):
"""
Test that inf and nan-like values are correctly parsed on all platforms.
Regression test for https://github.com/astropy/astropy/pull/3525
"""
text = dedent("""\
A
nan
+nan
-nan
inf
infinity
+inf
+infinity
-inf
-infinity
""")
expected = Table({'A': [np.nan, np.nan, np.nan,
np.inf, np.inf, np.inf, np.inf,
-np.inf, -np.inf]})
> table = read_basic(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:469:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_______________________________________________ test_fill_values[True] ________________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_fill_values_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_fill_values(parallel, read_basic):
"""
Make sure that the parameter fill_values works as intended. If fill_values
is not specified, the default behavior should be to convert '' to 0.
"""
text = """
A, B, C
, 2, nan
a, -999, -3.4
nan, 5, -9999
8, nan, 7.6e12
"""
> table = read_basic(text, delimiter=',', parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:487:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_______________________________________________ test_fill_values[False] _______________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_fill_values_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_fill_values(parallel, read_basic):
"""
Make sure that the parameter fill_values works as intended. If fill_values
is not specified, the default behavior should be to convert '' to 0.
"""
text = """
A, B, C
, 2, nan
a, -999, -3.4
nan, 5, -9999
8, nan, 7.6e12
"""
> table = read_basic(text, delimiter=',', parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:487:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
________________________________________ test_fill_include_exclude_names[True] ________________________________________
parallel = True
read_csv = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...f-svance/pytest-0/test_fill_include_exclude_name0'), format='csv', Reader=<class 'astropy.io.ascii.fastbasic.FastCsv'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_fill_include_exclude_names(parallel, read_csv):
"""
fill_include_names and fill_exclude_names should filter missing/empty value handling
in the same way that include_names and exclude_names filter output columns.
"""
text = """
A, B, C
, 1, 2
3, , 4
5, 5,
"""
> table = read_csv(text, fill_include_names=['A', 'B'], parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:534:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_______________________________________ test_fill_include_exclude_names[False] ________________________________________
parallel = False
read_csv = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...f-svance/pytest-0/test_fill_include_exclude_name1'), format='csv', Reader=<class 'astropy.io.ascii.fastbasic.FastCsv'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_fill_include_exclude_names(parallel, read_csv):
"""
fill_include_names and fill_exclude_names should filter missing/empty value handling
in the same way that include_names and exclude_names filter output columns.
"""
text = """
A, B, C
, 1, 2
3, , 4
5, 5,
"""
> table = read_csv(text, fill_include_names=['A', 'B'], parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:534:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
________________________________________________ test_many_rows[True] _________________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_many_rows_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_many_rows(parallel, read_basic):
"""
Make sure memory reallocation works okay when the number of rows
is large (so that each column string is longer than INITIAL_COL_SIZE).
"""
text = 'A B C\n'
for i in range(500): # create 500 rows
text += ' '.join([str(i) for i in range(3)])
text += '\n'
> table = read_basic(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:561:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
________________________________________________ test_many_rows[False] ________________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_many_rows_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_many_rows(parallel, read_basic):
"""
Make sure memory reallocation works okay when the number of rows
is large (so that each column string is longer than INITIAL_COL_SIZE).
"""
text = 'A B C\n'
for i in range(500): # create 500 rows
text += ' '.join([str(i) for i in range(3)])
text += '\n'
> table = read_basic(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:561:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_______________________________________________ test_many_columns[True] _______________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_many_columns_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_many_columns(parallel, read_basic):
"""
Make sure memory reallocation works okay when the number of columns
is large (so that each header string is longer than INITIAL_HEADER_SIZE).
"""
# create a string with 500 columns and two data rows
text = ' '.join([str(i) for i in range(500)])
text += ('\n' + text + '\n' + text)
> table = read_basic(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:575:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
______________________________________________ test_many_columns[False] _______________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_many_columns_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_many_columns(parallel, read_basic):
"""
Make sure memory reallocation works okay when the number of columns
is large (so that each header string is longer than INITIAL_HEADER_SIZE).
"""
# create a string with 500 columns and two data rows
text = ' '.join([str(i) for i in range(500)])
text += ('\n' + text + '\n' + text)
> table = read_basic(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:575:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
________________________________________________ test_read_tab[False] _________________________________________________
parallel = False
read_tab = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_read_tab_False_0'), format='tab', Reader=<class 'astropy.io.ascii.fastbasic.FastTab'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_read_tab(parallel, read_tab):
"""
The fast reader for tab-separated values should not strip whitespace, unlike
the basic reader.
"""
if parallel:
pytest.xfail("Multiprocessing can fail with quoted fields")
text = '1\t2\t3\n a\t b \t\n c\t" d\n e"\t '
> table = read_tab(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:621:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
____________________________________________ test_default_data_start[True] ____________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...vance/pytest-0/test_default_data_start_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_default_data_start(parallel, read_basic):
"""
If data_start is not explicitly passed to read(), data processing should
beginning right after the header.
"""
text = 'ignore this line\na b c\n1 2 3\n4 5 6'
> table = read_basic(text, header_start=1, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:636:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
___________________________________________ test_default_data_start[False] ____________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...ance/pytest-0/test_default_data_start_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_default_data_start(parallel, read_basic):
"""
If data_start is not explicitly passed to read(), data processing should
beginning right after the header.
"""
text = 'ignore this line\na b c\n1 2 3\n4 5 6'
> table = read_basic(text, header_start=1, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:636:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_____________________________________________ test_commented_header[True] _____________________________________________
parallel = True
read_commented_header = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt..._commented_header_True_0'), format='commented_header', Reader=<class 'astropy.io.ascii.fastbasic.FastCommentedHeader'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_commented_header(parallel, read_commented_header):
"""
The FastCommentedHeader reader should mimic the behavior of the
CommentedHeader by overriding the default header behavior of FastBasic.
"""
text = """
# A B C
1 2 3
4 5 6
"""
> t1 = read_commented_header(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:652:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:233: in read
out = super(FastCommentedHeader, self).read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
____________________________________________ test_commented_header[False] _____________________________________________
parallel = False
read_commented_header = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...commented_header_False_0'), format='commented_header', Reader=<class 'astropy.io.ascii.fastbasic.FastCommentedHeader'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_commented_header(parallel, read_commented_header):
"""
The FastCommentedHeader reader should mimic the behavior of the
CommentedHeader by overriding the default header behavior of FastBasic.
"""
text = """
# A B C
1 2 3
4 5 6
"""
> t1 = read_commented_header(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:652:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:233: in read
out = super(FastCommentedHeader, self).read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
___________________________________________________ test_rdb[True] ____________________________________________________
parallel = True
read_rdb = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_rdb_True_0'), format='rdb', Reader=<class 'astropy.io.ascii.fastbasic.FastRdb'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_rdb(parallel, read_rdb):
"""
Make sure the FastRdb reader works as expected.
"""
text = """
A\tB\tC
1n\tS\t4N
1\t 9\t4.3
"""
> table = read_rdb(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:682:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
___________________________________________________ test_rdb[False] ___________________________________________________
parallel = False
read_rdb = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_rdb_False_0'), format='rdb', Reader=<class 'astropy.io.ascii.fastbasic.FastRdb'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_rdb(parallel, read_rdb):
"""
Make sure the FastRdb reader works as expected.
"""
text = """
A\tB\tC
1n\tS\t4N
1\t 9\t4.3
"""
> table = read_rdb(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:682:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_______________________________________________ test_data_start[False] ________________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_data_start_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_data_start(parallel, read_basic):
"""
Make sure that data parsing begins at data_start (ignoring empty and
commented lines but not taking quoted values into account).
"""
if parallel:
pytest.xfail("Multiprocessing can fail with quoted fields")
text = """
A B C
1 2 3
4 5 6
7 8 "9
\t1"
# comment
10 11 12
"""
> table = read_basic(text, data_start=2, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:723:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
___________________________________________ test_quoted_empty_values[False] ___________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...ance/pytest-0/test_quoted_empty_values_False0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_quoted_empty_values(parallel, read_basic):
"""
Quoted empty values spanning multiple lines should be treated correctly.
"""
if parallel:
pytest.xfail("Multiprocessing can fail with quoted fields")
text = 'a b c\n1 2 " \n "'
> table = read_basic(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:765:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
___________________________________________ test_csv_comment_default[True] ____________________________________________
parallel = True
read_csv = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...f-svance/pytest-0/test_csv_comment_default_True_0'), format='csv', Reader=<class 'astropy.io.ascii.fastbasic.FastCsv'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_csv_comment_default(parallel, read_csv):
"""
Unless the comment parameter is specified, the CSV reader should
not treat any lines as comments.
"""
text = 'a,b,c\n#1,2,3\n4,5,6'
> table = read_csv(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:776:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
___________________________________________ test_csv_comment_default[False] ___________________________________________
parallel = False
read_csv = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...f-svance/pytest-0/test_csv_comment_default_False0'), format='csv', Reader=<class 'astropy.io.ascii.fastbasic.FastCsv'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_csv_comment_default(parallel, read_csv):
"""
Unless the comment parameter is specified, the CSV reader should
not treat any lines as comments.
"""
text = 'a,b,c\n#1,2,3\n4,5,6'
> table = read_csv(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:776:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
________________________________________ test_whitespace_before_comment[True] _________________________________________
parallel = True
read_tab = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...f-svance/pytest-0/test_whitespace_before_comment0'), format='tab', Reader=<class 'astropy.io.ascii.fastbasic.FastTab'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_whitespace_before_comment(parallel, read_tab):
"""
Readers that don't strip whitespace from data (Tab, RDB)
should still treat lines with leading whitespace and then
the comment char as comment lines.
"""
text = 'a\tb\tc\n # comment line\n1\t2\t3'
> table = read_tab(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:789:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
________________________________________ test_whitespace_before_comment[False] ________________________________________
parallel = False
read_tab = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...f-svance/pytest-0/test_whitespace_before_comment1'), format='tab', Reader=<class 'astropy.io.ascii.fastbasic.FastTab'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_whitespace_before_comment(parallel, read_tab):
"""
Readers that don't strip whitespace from data (Tab, RDB)
should still treat lines with leading whitespace and then
the comment char as comment lines.
"""
text = 'a\tb\tc\n # comment line\n1\t2\t3'
> table = read_tab(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:789:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
______________________________________ test_strip_line_trailing_whitespace[True] ______________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...ance/pytest-0/test_strip_line_trailing_white0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_strip_line_trailing_whitespace(parallel, read_basic):
"""
Readers that strip whitespace from lines should ignore
trailing whitespace after the last data value of each
row.
"""
text = 'a b c\n1 2 \n3 4 5'
with pytest.raises(CParserError) as e:
ascii.read(StringIO(text), format='fast_basic', guess=False)
assert 'not enough columns found in line 1' in str(e)
text = 'a b c\n 1 2 3 \t \n 4 5 6 '
> table = read_basic(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:807:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_____________________________________ test_strip_line_trailing_whitespace[False] ______________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...ance/pytest-0/test_strip_line_trailing_white1'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_strip_line_trailing_whitespace(parallel, read_basic):
"""
Readers that strip whitespace from lines should ignore
trailing whitespace after the last data value of each
row.
"""
text = 'a b c\n1 2 \n3 4 5'
with pytest.raises(CParserError) as e:
ascii.read(StringIO(text), format='fast_basic', guess=False)
assert 'not enough columns found in line 1' in str(e)
text = 'a b c\n 1 2 3 \t \n 4 5 6 '
> table = read_basic(text, parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:807:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_________________________________________________ test_no_data[True] __________________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_no_data_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_no_data(parallel, read_basic):
"""
As long as column names are supplied, the C reader
should return an empty table in the absence of data.
"""
> table = read_basic('a b c', parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:818:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_________________________________________________ test_no_data[False] _________________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_no_data_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_no_data(parallel, read_basic):
"""
As long as column names are supplied, the C reader
should return an empty table in the absence of data.
"""
> table = read_basic('a b c', parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:818:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_______________________________________________ test_line_endings[True] _______________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_line_endings_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
read_commented_header = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...test_line_endings_True_0'), format='commented_header', Reader=<class 'astropy.io.ascii.fastbasic.FastCommentedHeader'>)
read_rdb = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_line_endings_True_0'), format='rdb', Reader=<class 'astropy.io.ascii.fastbasic.FastRdb'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_line_endings(parallel, read_basic, read_commented_header, read_rdb):
"""
Make sure the fast reader accepts CR and CR+LF
as newlines.
"""
text = 'a b c\n1 2 3\n4 5 6\n7 8 9\n'
expected = Table([[1, 4, 7], [2, 5, 8], [3, 6, 9]], names=('a', 'b', 'c'))
for newline in ('\r\n', '\r'):
> table = read_basic(text.replace('\n', newline), parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:836:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
______________________________________________ test_line_endings[False] _______________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_line_endings_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
read_commented_header = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...est_line_endings_False_0'), format='commented_header', Reader=<class 'astropy.io.ascii.fastbasic.FastCommentedHeader'>)
read_rdb = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_line_endings_False_0'), format='rdb', Reader=<class 'astropy.io.ascii.fastbasic.FastRdb'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_line_endings(parallel, read_basic, read_commented_header, read_rdb):
"""
Make sure the fast reader accepts CR and CR+LF
as newlines.
"""
text = 'a b c\n1 2 3\n4 5 6\n7 8 9\n'
expected = Table([[1, 4, 7], [2, 5, 8], [3, 6, 9]], names=('a', 'b', 'c'))
for newline in ('\r\n', '\r'):
> table = read_basic(text.replace('\n', newline), parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:836:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
______________________________________________ test_store_comments[True] ______________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...of-svance/pytest-0/test_store_comments_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_store_comments(parallel, read_basic):
"""
Make sure that the output Table produced by the fast
reader stores any comment lines in its meta attribute.
"""
text = """
# header comment
a b c
# comment 2
# comment 3
1 2 3
4 5 6
"""
> table = read_basic(text, parallel=parallel, check_meta=True)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:865:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_____________________________________________ test_store_comments[False] ______________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...f-svance/pytest-0/test_store_comments_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_store_comments(parallel, read_basic):
"""
Make sure that the output Table produced by the fast
reader stores any comment lines in its meta attribute.
"""
text = """
# header comment
a b c
# comment 2
# comment 3
1 2 3
4 5 6
"""
> table = read_basic(text, parallel=parallel, check_meta=True)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:865:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
_______________________________________________ test_empty_quotes[True] _______________________________________________
parallel = True
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_empty_quotes_True_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_empty_quotes(parallel, read_basic):
"""
Make sure the C reader doesn't segfault when the
input data contains empty quotes. [#3407]
"""
> table = read_basic('a b\n1 ""\n2 ""', parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:875:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
______________________________________________ test_empty_quotes[False] _______________________________________________
parallel = False
read_basic = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pytest-of-svance/pytest-0/test_empty_quotes_False_0'), format='basic', Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_empty_quotes(parallel, read_basic):
"""
Make sure the C reader doesn't segfault when the
input data contains empty quotes. [#3407]
"""
> table = read_basic('a b\n1 ""\n2 ""', parallel=parallel)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:875:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
___________________________________________ test_fast_tab_with_names[True] ____________________________________________
parallel = True
read_tab = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...f-svance/pytest-0/test_fast_tab_with_names_True_0'), format='tab', Reader=<class 'astropy.io.ascii.fastbasic.FastTab'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_fast_tab_with_names(parallel, read_tab):
"""
Make sure the C reader doesn't segfault when the header for the
first column is missing [#3545]
"""
content = """#
\tdecDeg\tRate_pn_offAxis\tRate_mos2_offAxis\tObsID\tSourceID\tRADeg\tversion\tCounts_pn\tRate_pn\trun\tRate_mos1\tRate_mos2\tInserted_pn\tInserted_mos2\tbeta\tRate_mos1_offAxis\trcArcsec\tname\tInserted\tCounts_mos1\tInserted_mos1\tCounts_mos2\ty\tx\tCounts\toffAxis\tRot
-3.007559\t0.0000\t0.0010\t0013140201\t0\t213.462574\t0\t2\t0.0002\t0\t0.0001\t0.0001\t0\t1\t0.66\t0.0217\t3.0\tfakeXMMXCS J1413.8-0300\t3\t1\t2\t1\t398.000\t127.000\t5\t13.9\t72.3\t"""
head = ['A{0}'.format(i) for i in range(28)]
table = read_tab(content, data_start=1,
> parallel=parallel, names=head)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:890:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
___________________________________________ test_fast_tab_with_names[False] ___________________________________________
parallel = False
read_tab = functools.partial(<function _read at 0x11dcaa0d0>, local('/private/var/folders/k0/8xr544gx23996t3d1d2s_d1h813q0m/T/pyt...f-svance/pytest-0/test_fast_tab_with_names_False0'), format='tab', Reader=<class 'astropy.io.ascii.fastbasic.FastTab'>)
@pytest.mark.parametrize("parallel", [True, False])
def test_fast_tab_with_names(parallel, read_tab):
"""
Make sure the C reader doesn't segfault when the header for the
first column is missing [#3545]
"""
content = """#
\tdecDeg\tRate_pn_offAxis\tRate_mos2_offAxis\tObsID\tSourceID\tRADeg\tversion\tCounts_pn\tRate_pn\trun\tRate_mos1\tRate_mos2\tInserted_pn\tInserted_mos2\tbeta\tRate_mos1_offAxis\trcArcsec\tname\tInserted\tCounts_mos1\tInserted_mos1\tCounts_mos2\ty\tx\tCounts\toffAxis\tRot
-3.007559\t0.0000\t0.0010\t0013140201\t0\t213.462574\t0\t2\t0.0002\t0\t0.0001\t0.0001\t0\t1\t0.66\t0.0217\t3.0\tfakeXMMXCS J1413.8-0300\t3\t1\t2\t1\t398.000\t127.000\t5\t13.9\t72.3\t"""
head = ['A{0}'.format(i) for i in range(28)]
table = read_tab(content, data_start=1,
> parallel=parallel, names=head)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:890:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read
t7 = ascii.read(filename, format=format, guess=False, **kwargs)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/ui.py:328: in read
dat = fast_reader.read(table)
anaconda/lib/python3.5/site-packages/astropy/io/ascii/fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
______________________________________________ test_read_all_files[True] ______________________________________________
fast_reader = True
@pytest.mark.parametrize('fast_reader', [True, False, 'force'])
def test_read_all_files(fast_reader):
for testfile in get_testfiles():
if testfile.get('skip'):
print('\n\n******** SKIPPING %s' % testfile['name'])
continue
print('\n\n******** READING %s' % testfile['name'])
for guess in (True, False):
test_opts = testfile['opts'].copy()
if 'guess' not in test_opts:
test_opts['guess'] = guess
if 'Reader' in test_opts and 'fast_{0}'.format(test_opts['Reader']._format_name) \
in core.FAST_CLASSES: # has fast version
if 'Inputter' not in test_opts: # fast reader doesn't allow this
test_opts['fast_reader'] = fast_reader
> table = ascii.read(testfile['name'], **test_opts)
test_read.py:131:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../ui.py:328: in read
dat = fast_reader.read(table)
../fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
------------------------------------------------ Captured stdout call -------------------------------------------------
******** READING t/apostrophe.rdb
_____________________________________________ test_read_all_files[force] ______________________________________________
fast_reader = 'force'
@pytest.mark.parametrize('fast_reader', [True, False, 'force'])
def test_read_all_files(fast_reader):
for testfile in get_testfiles():
if testfile.get('skip'):
print('\n\n******** SKIPPING %s' % testfile['name'])
continue
print('\n\n******** READING %s' % testfile['name'])
for guess in (True, False):
test_opts = testfile['opts'].copy()
if 'guess' not in test_opts:
test_opts['guess'] = guess
if 'Reader' in test_opts and 'fast_{0}'.format(test_opts['Reader']._format_name) \
in core.FAST_CLASSES: # has fast version
if 'Inputter' not in test_opts: # fast reader doesn't allow this
test_opts['fast_reader'] = fast_reader
> table = ascii.read(testfile['name'], **test_opts)
test_read.py:131:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../ui.py:328: in read
dat = fast_reader.read(table)
../fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
------------------------------------------------ Captured stdout call -------------------------------------------------
******** READING t/apostrophe.rdb
_________________________________________ test_read_all_files_via_table[True] _________________________________________
fast_reader = True
@pytest.mark.parametrize('fast_reader', [True, False, 'force'])
def test_read_all_files_via_table(fast_reader):
for testfile in get_testfiles():
if testfile.get('skip'):
print('\n\n******** SKIPPING %s' % testfile['name'])
continue
print('\n\n******** READING %s' % testfile['name'])
for guess in (True, False):
test_opts = testfile['opts'].copy()
if 'guess' not in test_opts:
test_opts['guess'] = guess
if 'Reader' in test_opts:
format = 'ascii.{0}'.format(test_opts['Reader']._format_name)
del test_opts['Reader']
else:
format = 'ascii'
if 'fast_{0}'.format(format) in core.FAST_CLASSES:
test_opts['fast_reader'] = fast_reader
> table = Table.read(testfile['name'], format=format, **test_opts)
test_read.py:155:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../../../table/table.py:2332: in read
return io_registry.read(cls, *args, **kwargs)
../../registry.py:351: in read
data = reader(*args, **kwargs)
../connect.py:37: in io_read
return read(filename, format=format, **kwargs)
../ui.py:328: in read
dat = fast_reader.read(table)
../fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
------------------------------------------------ Captured stdout call -------------------------------------------------
******** READING t/apostrophe.rdb
________________________________________ test_read_all_files_via_table[False] _________________________________________
fast_reader = False
@pytest.mark.parametrize('fast_reader', [True, False, 'force'])
def test_read_all_files_via_table(fast_reader):
for testfile in get_testfiles():
if testfile.get('skip'):
print('\n\n******** SKIPPING %s' % testfile['name'])
continue
print('\n\n******** READING %s' % testfile['name'])
for guess in (True, False):
test_opts = testfile['opts'].copy()
if 'guess' not in test_opts:
test_opts['guess'] = guess
if 'Reader' in test_opts:
format = 'ascii.{0}'.format(test_opts['Reader']._format_name)
del test_opts['Reader']
else:
format = 'ascii'
if 'fast_{0}'.format(format) in core.FAST_CLASSES:
test_opts['fast_reader'] = fast_reader
> table = Table.read(testfile['name'], format=format, **test_opts)
test_read.py:155:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../../../table/table.py:2332: in read
return io_registry.read(cls, *args, **kwargs)
../../registry.py:351: in read
data = reader(*args, **kwargs)
../connect.py:37: in io_read
return read(filename, format=format, **kwargs)
../ui.py:328: in read
dat = fast_reader.read(table)
../fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
------------------------------------------------ Captured stdout call -------------------------------------------------
******** READING t/apostrophe.rdb
________________________________________ test_read_all_files_via_table[force] _________________________________________
fast_reader = 'force'
@pytest.mark.parametrize('fast_reader', [True, False, 'force'])
def test_read_all_files_via_table(fast_reader):
for testfile in get_testfiles():
if testfile.get('skip'):
print('\n\n******** SKIPPING %s' % testfile['name'])
continue
print('\n\n******** READING %s' % testfile['name'])
for guess in (True, False):
test_opts = testfile['opts'].copy()
if 'guess' not in test_opts:
test_opts['guess'] = guess
if 'Reader' in test_opts:
format = 'ascii.{0}'.format(test_opts['Reader']._format_name)
del test_opts['Reader']
else:
format = 'ascii'
if 'fast_{0}'.format(format) in core.FAST_CLASSES:
test_opts['fast_reader'] = fast_reader
> table = Table.read(testfile['name'], format=format, **test_opts)
test_read.py:155:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../../../table/table.py:2332: in read
return io_registry.read(cls, *args, **kwargs)
../../registry.py:351: in read
data = reader(*args, **kwargs)
../connect.py:37: in io_read
return read(filename, format=format, **kwargs)
../ui.py:328: in read
dat = fast_reader.read(table)
../fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
------------------------------------------------ Captured stdout call -------------------------------------------------
******** READING t/apostrophe.rdb
__________________________________________ test_empty_table_no_header[True] ___________________________________________
fast_reader = True
@pytest.mark.parametrize('fast_reader', [True, False, 'force'])
def test_empty_table_no_header(fast_reader):
with pytest.raises(ascii.InconsistentTableError):
table = ascii.read('t/no_data_without_header.dat', Reader=ascii.NoHeader,
> guess=False, fast_reader=fast_reader)
test_read.py:235:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../ui.py:328: in read
dat = fast_reader.read(table)
../fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
__________________________________________ test_empty_table_no_header[force] __________________________________________
fast_reader = 'force'
@pytest.mark.parametrize('fast_reader', [True, False, 'force'])
def test_empty_table_no_header(fast_reader):
with pytest.raises(ascii.InconsistentTableError):
table = ascii.read('t/no_data_without_header.dat', Reader=ascii.NoHeader,
> guess=False, fast_reader=fast_reader)
test_read.py:235:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../ui.py:328: in read
dat = fast_reader.read(table)
../fastbasic.py:100: in read
**self.kwargs)
astropy/io/ascii/cparser.pyx:230: in astropy.io.ascii.cparser.CParser.__cinit__ (astropy/io/ascii/cparser.c:3942)
???
astropy/io/ascii/cparser.pyx:272: in astropy.io.ascii.cparser.CParser.setup_tokenizer (astropy/io/ascii/cparser.c:4686)
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E OSError: [Errno 22] Invalid argument
astropy/io/ascii/cparser.pyx:127: OSError
___________________________________________ test_multiprocessing_forkserver ___________________________________________
@pytest.mark.skipif('not PY3_4 or sys.platform == "win32" or sys.platform.startswith("gnu0")')
def test_multiprocessing_forkserver():
"""
Test that using multiprocessing with forkserver works. Perhaps
a simpler more direct test would be to just open some local
sockets and pass something through them.
Regression test for https://github.com/astropy/astropy/pull/3713
"""
import multiprocessing
ctx = multiprocessing.get_context('forkserver')
> pool = ctx.Pool(1)
anaconda/lib/python3.5/site-packages/astropy/tests/tests/test_socketblocker.py:82:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
anaconda/lib/python3.5/multiprocessing/context.py:118: in Pool
context=self.get_context())
anaconda/lib/python3.5/multiprocessing/pool.py:168: in __init__
self._repopulate_pool()
anaconda/lib/python3.5/multiprocessing/pool.py:233: in _repopulate_pool
w.start()
anaconda/lib/python3.5/multiprocessing/process.py:105: in start
self._popen = self._Popen(self)
anaconda/lib/python3.5/multiprocessing/context.py:281: in _Popen
return Popen(process_obj)
anaconda/lib/python3.5/multiprocessing/popen_forkserver.py:36: in __init__
super().__init__(process_obj)
anaconda/lib/python3.5/multiprocessing/popen_fork.py:20: in __init__
self._launch(process_obj)
anaconda/lib/python3.5/multiprocessing/popen_forkserver.py:56: in _launch
self.pid = forkserver.read_unsigned(self.sentinel)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
fd = 24
def read_unsigned(fd):
data = b''
length = UNSIGNED_STRUCT.size
while len(data) < length:
s = os.read(fd, length - len(data))
if not s:
> raise EOFError('unexpected EOF')
E EOFError: unexpected EOF
anaconda/lib/python3.5/multiprocessing/forkserver.py:233: EOFError
------------------------------------------------ Captured stderr call -------------------------------------------------
Traceback (most recent call last):
File "/Users/svance/anaconda/lib/python3.5/multiprocessing/forkserver.py", line 184, in main
_serve_one(s, listener, alive_r, handler)
File "/Users/svance/anaconda/lib/python3.5/multiprocessing/forkserver.py", line 202, in _serve_one
fds = reduction.recvfds(s, MAXFDS_TO_SEND + 1)
File "/Users/svance/anaconda/lib/python3.5/multiprocessing/reduction.py", line 167, in recvfds
assert len(a) % 256 == msg[0]
AssertionError
========================== 74 failed, 8125 passed, 103 skipped, 37 xfailed in 185.33 seconds ==========================
1
Issue Analytics
- State:
- Created 7 years ago
- Comments:14 (10 by maintainers)
Top Results From Across the Web
If I have multiple tests in one class and a preceding test fails ...
I'm trying to avoid coding in a logic check for test failures if it's unnecessary, but it appears that may be the only...
Read more >unittest — Unit testing framework — Python 3.11.1 ...
test fixture. A test fixture represents the preparation needed to perform one or more tests, and any associated cleanup actions. This may involve,...
Read more >Python | Skipping Test Failures - GeeksforGeeks
Problem – To skip or mark selected tests as an anticipated failure in the unit tests. The unittest module has decorators that can...
Read more >Getting Started With Testing in Python
Testing multiple components is known as integration testing. ... Writing tests in this way is okay for a simple check, but what if...
Read more >UnitTest Framework - Quick Guide - Tutorialspoint
Python testing framework uses Python's built-in assert() function which tests a particular condition. If the assertion fails, an AssertionError will be raised.
Read more >
Top Related Medium Post
No results found
Top Related StackOverflow Question
No results found
Troubleshoot Live Code
Lightrun enables developers to add logs, metrics and snapshots to live code - no restarts or redeploys required.
Start Free
Top Related Reddit Thread
No results found
Top Related Hackernoon Post
No results found
Top Related Tweet
No results found
Top Related Dev.to Post
No results found
Top Related Hashnode Post
No results found
@bsipocz , is the new title less confusing?
Thank you for the report but could you copy the log to a gist? That makes it much easier to review.