Permission denied: '/home/.astropy' when importing astropy in AWS EMR
See original GitHub issueDescription
When I run a Jupyter notebook in AWS EMR using PySpark kernel I get a permission denied error when I run the first cell which contains an import of sbpy
, it looks like astropy is trying to access ‘/home/.astropy’, which probably just doesn’t exist on the EC2 where the EMR notebook is running. How do we configure things so this won’t happen and astropy can initialize without trying to access this location?
Expected behavior
I expected for sbpy
to be imported without an error.
Actual behavior
An error was encountered:
[Errno 13] Permission denied: '/home/.astropy'
Traceback (most recent call last):
File "/usr/local/lib/python3.7/site-packages/sbpy/data/__init__.py", line 792, in <module>
from .ephem import Ephem # noqa: E402
File "/usr/local/lib/python3.7/site-packages/sbpy/data/ephem.py", line 20, in <module>
from astroquery.jplhorizons import Horizons
File "/usr/local/lib/python3.7/site-packages/astroquery/jplhorizons/__init__.py", line 218, in <module>
from .core import Horizons, HorizonsClass
File "/usr/local/lib/python3.7/site-packages/astroquery/jplhorizons/core.py", line 1308, in <module>
Horizons = HorizonsClass()
File "/usr/local/lib/python3.7/site-packages/astroquery/jplhorizons/core.py", line 92, in __init__
super(HorizonsClass, self).__init__()
File "/usr/local/lib/python3.7/site-packages/astroquery/query.py", line 179, in __init__
paths.get_cache_dir(), 'astroquery',
File "/usr/local/lib64/python3.7/site-packages/astropy/config/paths.py", line 170, in get_cache_dir
return os.path.abspath(_find_or_create_root_dir('cache', linkto, rootname))
File "/usr/local/lib64/python3.7/site-packages/astropy/config/paths.py", line 297, in _find_or_create_root_dir
os.mkdir(innerdir)
PermissionError: [Errno 13] Permission denied: '/home/.astropy'
Steps to Reproduce
- Open EMR notebook in AWS AMR
- In the first cell run import
sbpy.data.Names
from sbpy.data import Names
System Details
Results of the above from EMR notebook cell: Linux-4.14.281-212.502.amzn2.x86_64-x86_64-with-glibc2.2.5 Python 3.7.10 (default, Jun 3 2021, 00:02:01) [GCC 7.3.1 20180712 (Red Hat 7.3.1-13)] Numpy 1.20.0 pyerfa 2.0.0.1 astropy 4.3.1 Scipy 1.7.3
Issue Analytics
- State:
- Created a year ago
- Comments:6 (2 by maintainers)
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Yes agreed, it looks like this can be taken care of with some configuration for astropy on the EMR cluster. I don’t use astropy directly so this is my first exposure, I didn’t know there was this local .astropy directory being created, etc., I’m just using sbpy for converting asteroid designations, and I can do that outside of an EMR job so I’ve just done the work needing sbpy locally and it works fine. In any event I really appreciate the fast attention to this issue and for the guidance to the configuration options, @pllim. Thank you!
Bmmk
On Sat, Jul 30, 2022, 3:42 PM P. L. Lim @.***> wrote: