Add support for generating morphometrics files when images present in the same directory

Currently, the recently merged PR (https://github.com/neuropoly/axondeepseg/pull/434), which adds an additional CLI feature to generate morphometrics files of the image using CLI command, is missing an additional functionality where when a user wants to generate morphometrics of all the images present in the same directory, the axondeepseg_morphometrics cli doesn’t work for this use case.

Proposed Solution

For this, instead of just naming the the morphometrics files as axon_morphometrics.xlsx, I suggest we prepend the image name too with the computed morphometrics files. For instance, if the image name is test_image.png, the moprhometrics file generated would be test_image_axon_morphometrics.xlsx Renaming the morphometrics file would add an additional support for the described use case, where all the images are present in the same directory.

I’ll open a PR resolving this issue.

[vasudev-sharma]

Opened PR #518 for this.

i’m 100% in favour of option 2, ie: using image file name and add suffix “_ads_morphometrics.csv”

@jcohenadad as discussed earlier we decided to add suffix _axon_morphometrics.csv to the morphometrics file. Would you like to change it to _ads_morphometrics.csv instead?

[mariehbourget]

Would you like to change it to _ads_morphometrics.csv instead?

only if everyone is ok with that

I don’t have a strong opinion about this, both are good with me.