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pip release 0.6.2 ModuleNotFoundError

See original GitHub issue

I used pip to install scanorama version 0.6.2 and ran

import scanorama

with Python 3.6, which resulted in

---------------------------------------------------------------------------
ModuleNotFoundError                       Traceback (most recent call last)
<ipython-input-1-4ea9f8d58e85> in <module>()
----> 1 import scanorama

/opt/conda/lib/python3.6/site-packages/scanorama/__init__.py in <module>()
----> 1 from .scanorama import *

/opt/conda/lib/python3.6/site-packages/scanorama/scanorama.py in <module>()
     15 
     16 from .t_sne_approx import TSNEApprox
---> 17 from .integration import harmony_integrate
     18 from .utils import plt, dispersion, reduce_dimensionality
     19 from .utils import visualize_cluster, visualize_expr, visualize_dropout

/opt/conda/lib/python3.6/site-packages/scanorama/integration.py in <module>()
----> 1 from ample import gs, uniform, srs, kmeanspp
      2 import numpy as np
      3 from subprocess import Popen
      4 from time import time
      5 

ModuleNotFoundError: No module named 'ample'

Google searches aren’t immediately showing what the “ample” module might be - is it misspelled? Uninstalling and reverting to version 0.6 fixes this issue. Let me know if I can provide any more information.

Issue Analytics

State:
Created 5 years ago
Comments:6 (4 by maintainers)

Top GitHub Comments

1reaction

brianhiecommented, Dec 17, 2018

Yikes, looks like a problem with intervaltree v3, try installing intervaltree==2.1.0 and then installing scanorama? I’ll look into modifying the dependencies in setup.py as well

1reaction

brianhiecommented, Dec 17, 2018

@alex-wenzel Oops sorry! Fixed in 0.7

Ample is an experimental package that we hope to unveil soon 😃

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