Stuck on an issue?

Lightrun Answers was designed to reduce the constant googling that comes with debugging 3rd party libraries. It collects links to all the places you might be looking at while hunting down a tough bug.

And, if you’re still stuck at the end, we’re happy to hop on a call to see how we can help out.

Spike: Investigate NPE causing workflow failure

See original GitHub issue

Version: Cromwell v38 Backend: PAPI v2

Running a hello world workflow on Pipelines API v2 against inputs originating from a Requester Pays bucket.

The job finishes running, generates a 0 return code and detritus logs (stdout/stderr). However the workflow failures with an error message (full message attached). failed-workflow-metadata.txt

Unable to complete JES Api Request. Caught NPE while processing operation projects/dvoet-prod-test-20190305-3/operations/11506961050484846699

Searched the code and found the error here: https://github.com/broadinstitute/cromwell/blob/2d8ff3b0962bbe84828445fd3ac77d2379e499c2/supportedBackends/google/pipelines/v2alpha1/src/main/scala/cromwell/backend/google/pipelines/v2alpha1/api/request/GetRequestHandler.scala#L49-L83

Operation metadata attached as well. operation-metadata.yaml.txt

Issue Analytics

State:
Created 4 years ago
Comments:6 (4 by maintainers)

Top GitHub Comments

1reaction

rexwangcccommented, Mar 26, 2019

We have also found 2000/2000 workflows failed due to this issue Unable to complete JES Api Request. Caught NPE while processing... today. We are using cass-prod "cromwell": "36-fde91e6", and the Cromwell hasn’t been changed for at least ~2 weeks

0reactions

ruchimcommented, Mar 27, 2019

Closing this as the real fix is filed here: https://github.com/broadinstitute/cromwell/issues/4774

Top Results From Across the Web

NullPointerException in SynchronousQueue - Stack Overflow

I have no idea where to start investigating, as the error message does not tell what part of my code causes the error....

NullPointerException when trying to run a UCA - IBM

This error typically occurs because the Event Manager has failed to startup properly. The most likely cause of the startup failure is that...

Testing - Release Notes - Liferay Issues

OAuth2#RememberDeviceWithMultipleAuth - Investigate why case only failed on Jenkins ... Define an action for mobile device rules for a page cause NPE ...

Read me | OpManager Help - ManageEngine

OpManager : For agent-monitored devices, data was not being collected for file monitors, due to the failure in digital signature validation. This has...

Dataproc release notes - Google Cloud

Fixed a bug that caused a Dataproc cluster with a Dataproc Metastore service to fail the creation process, if the cluster was in...