Strange "Boxed Error", probably authorization / config

I assume this error has to do with my config, but not particularly clear what is going on…

Here is the workflow, inputs, and config; I am running from swagger: myWorkflow_awsbatch.wdl.txt

aws.conf.txt

hello.inputs.txt

2018-06-06 16:18:30,442 cromwell-system-akka.dispatchers.api-dispatcher-215 INFO  - WDL (Unspecified version) workflow 948bf608-f91b-46a7-b892-86454be067fd submitted
2018-06-06 16:18:47,222 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO  - 1 new workflows fetched
2018-06-06 16:18:47,222 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO  - WorkflowManagerActor Starting workflow UUID(948bf608-f91b-46a7-b892-86454be067fd)
2018-06-06 16:18:47,223 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO  - WorkflowManagerActor Successfully started WorkflowActor-948bf608-f91b-46a7-b892-86454be067fd
2018-06-06 16:18:47,223 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO  - Retrieved 1 workflows from the WorkflowStoreActor
2018-06-06 16:18:47,229 cromwell-system-akka.dispatchers.engine-dispatcher-32 INFO  - MaterializeWorkflowDescriptorActor [UUID(948bf608)]: Parsing workflow as WDL draft-2
2018-06-06 16:18:47,232 cromwell-system-akka.dispatchers.engine-dispatcher-32 ERROR - WorkflowManagerActor Workflow 948bf608-f91b-46a7-b892-86454be067fd failed (during MaterializingWorkflowDescriptorState): cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anon$1: Workflow input processing failed:
Boxed Error
scala.concurrent.impl.Promise$.resolver(Promise.scala:83)
scala.concurrent.impl.Promise$.scala$concurrent$impl$Promise$$resolveTry(Promise.scala:75)
scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:280)
scala.concurrent.Promise.complete(Promise.scala:49)
scala.concurrent.Promise.complete$(Promise.scala:48)
scala.concurrent.impl.Promise$DefaultPromise.complete(Promise.scala:183)
scala.concurrent.Promise.failure(Promise.scala:100)
scala.concurrent.Promise.failure$(Promise.scala:100)
scala.concurrent.impl.Promise$DefaultPromise.failure(Promise.scala:183)
cats.effect.IO.$anonfun$unsafeToFuture$2(IO.scala:328)
scala.util.Either.fold(Either.scala:189)
cats.effect.IO.$anonfun$unsafeToFuture$1(IO.scala:328)
cats.effect.IO.$anonfun$unsafeToFuture$1$adapted(IO.scala:328)
cats.effect.internals.IORunLoop$.cats$effect$internals$IORunLoop$$loop(IORunLoop.scala:98)
cats.effect.internals.IORunLoop$.start(IORunLoop.scala:35)
cats.effect.IO.unsafeRunAsync(IO.scala:257)
cats.effect.IO.unsafeToFuture(IO.scala:328)
cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anonfun$1.$anonfun$applyOrElse$1(MaterializeWorkflowDescriptorActor.scala:146)
scala.concurrent.Future.$anonfun$flatMap$1(Future.scala:303)
scala.concurrent.impl.Promise.$anonfun$transformWith$1(Promise.scala:37)
scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:43)
akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
	at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.cromwell$engine$workflow$lifecycle$materialization$MaterializeWorkflowDescriptorActor$$workflowInitializationFailed(MaterializeWorkflowDescriptorActor.scala:200)
	at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anonfun$2.applyOrElse(MaterializeWorkflowDescriptorActor.scala:173)
	at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor$$anonfun$2.applyOrElse(MaterializeWorkflowDescriptorActor.scala:165)
	at scala.runtime.AbstractPartialFunction.apply(AbstractPartialFunction.scala:34)
	at akka.actor.FSM.processEvent(FSM.scala:665)
	at akka.actor.FSM.processEvent$(FSM.scala:662)
	at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.akka$actor$LoggingFSM$$super$processEvent(MaterializeWorkflowDescriptorActor.scala:123)
	at akka.actor.LoggingFSM.processEvent(FSM.scala:801)
	at akka.actor.LoggingFSM.processEvent$(FSM.scala:783)
	at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.processEvent(MaterializeWorkflowDescriptorActor.scala:123)
	at akka.actor.FSM.akka$actor$FSM$$processMsg(FSM.scala:659)
	at akka.actor.FSM$$anonfun$receive$1.applyOrElse(FSM.scala:653)
	at akka.actor.Actor.aroundReceive(Actor.scala:514)
	at akka.actor.Actor.aroundReceive$(Actor.scala:512)
	at cromwell.engine.workflow.lifecycle.materialization.MaterializeWorkflowDescriptorActor.aroundReceive(MaterializeWorkflowDescriptorActor.scala:123)
	at akka.actor.ActorCell.receiveMessage(ActorCell.scala:527)
	at akka.actor.ActorCell.invoke(ActorCell.scala:496)
	at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:257)
	at akka.dispatch.Mailbox.run(Mailbox.scala:224)
	at akka.dispatch.Mailbox.exec(Mailbox.scala:234)
	at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
	at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
	at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
	at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

[elerch]

@tom-dyar Can you try again with latest? I fixed a ton of stuff in the last 24 hours, including a whole new processing pipeline for stdout/stderr and rc.

[mcovarr]

Thanks, that’s good to know. 🙂