question-mark
Stuck on an issue?

Lightrun Answers was designed to reduce the constant googling that comes with debugging 3rd party libraries. It collects links to all the places you might be looking at while hunting down a tough bug.

And, if you’re still stuck at the end, we’re happy to hop on a call to see how we can help out.

Support for WDL 1.1

See original GitHub issue

I tried running a WDL in version 1.1, to use the as_map(Array[Pair[X,Y]]) function, but it doesn’t work.

  "failures": [
    {
      "causedBy": [
        {
          "causedBy": [
            
          ],
          "message": "ERROR: Finished parsing without consuming all tokens.\n\nversion 1.1\n^\n     "
        }
      ],
      "message": "Workflow input processing failed"
    }
  ],

According to the LanguageSupport specifications, the only supported versions for WDL are 1.0 and development. Is this correct?

Would it be possible to add support for WDL 1.1?

Jira issue

Issue Analytics

  • State:open
  • Created 3 years ago
  • Reactions:6
  • Comments:5

github_iconTop GitHub Comments

5reactions
samuelejonescommented, Mar 8, 2022

I have also been running into issues regarding syntax and have just realised that Cromwell doesn’t support the WDL 1.1 spec. Any news on whether this is something that will be implemented soon? It has been over a year since the spec was introduced and it introduces features sorely lacking in 1.0…!

5reactions
Melkazcommented, Feb 11, 2022

Any update about WDL 1.1 support ?

Read more comments on GitHub >

github_iconTop Results From Across the Web

Language Support - Cromwell - Read the Docs
Cromwell supports the majority of Draft-2 of the WDL Spec. ... Cromwell provides support for Common Workflow Language (CWL), beginning with the core...
Read more >
Execute! - Terra Support
At the current moment, it looks like Cromwell does not support WDL 1.1 while other tools like miniwdl and wdlTools support this specification....
Read more >
Language Support — Dockstore documentation
Tool Tab Display, Yes (cwl version <= 1.1), Yes (wdl version <= 1.0), Yes, Limited support. Launch-with Platforms for workflows, BioData Catalyst
Read more >
Genomic Data Analysis – Amazon Omics FAQs - Amazon AWS
Amazon Omics is a purpose-built service that helps healthcare and life ... Amazon Omics workflows support workflow definitions compliant with the WDL 1.1...
Read more >
For the WDL (10) workflow language, Dockstore offers Launch ...
Download scientific diagram | For the WDL (10) workflow language, ... and testing to match with support for CWL 1.1 and WDL 1.0...
Read more >

github_iconTop Related Medium Post

No results found

github_iconTop Related StackOverflow Question

No results found

github_iconTroubleshoot Live Code

Lightrun enables developers to add logs, metrics and snapshots to live code - no restarts or redeploys required.
Start Free

github_iconTop Related Reddit Thread

No results found

github_iconTop Related Hackernoon Post

No results found

github_iconTop Related Tweet

No results found

github_iconTop Related Dev.to Post

No results found

github_iconTop Related Hashnode Post

No results found