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imread methods shows different frame number compare with ImageJ

See original GitHub issue

I’d like to read Tiff’s video using imread techniques from your package, however, I received more frames than what I see in ImageJ. When I use tif = TiffFile('temp.tif') and check the len, it gives me the same result (len(tif. pages)). This occurs in only a few of the videos. Is there any particular explanation for this?

Issue Analytics

State:
Created a year ago
Comments:5 (3 by maintainers)

Top GitHub Comments

1reaction

cgohlkecommented, May 30, 2022

In this case tifffile is using the OME metadata in the file, which obviously does not match the image data. This could be due to an interrupted acquisition. Try to use imread(filename, is_ome=False) or imread(filename, is_ome=False, is_imagej=False) to ignore the corrupted metadata.

0reactions

po60nanicommented, May 30, 2022

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