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TileDBError: [TileDB::S3] Error: Failed to read S3 object s3://hosted-cellxgene-prod/user_annotations/Meyer - ...
See original GitHub issueSentry Issue: HOSTED-CELLXGENE-46
TileDBError: [TileDB::S3] Error: Failed to read S3 object s3://hosted-cellxgene-prod/user_annotations/Meyer - Covid Airway/kwinkley@cmh.edu/1602702935.1848485/__array_schema.tdb
Exception:
Error message: No response body. with address : 52.218.212.201
(12 additional frame(s) were not displayed)
...
File "tiledb/highlevel.py", line 28, in open
return tiledb.Array.load_typed(uri, mode, key, None, attr, ctx)
File "tiledb/libtiledb.pyx", line 3634, in tiledb.libtiledb.Array.load_typed
File "tiledb/libtiledb.pyx", line 3474, in tiledb.libtiledb.preload_array
File "tiledb/libtiledb.pyx", line 476, in tiledb.libtiledb._raise_ctx_err
File "tiledb/libtiledb.pyx", line 461, in tiledb.libtiledb._raise_tiledb_error
Issue Analytics
- State:
- Created 3 years ago
- Comments:5 (5 by maintainers)
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Good catch, thank you! Could you do a quick check and see whether you’re able to repro? i.e. see if you can generate the error by opening a tileDB array with spaces and @ symbols?
It was a different problem. If a user removes all their annotations, then we fail. This is because a new database entry is added for a tiledb array that never gets written (because it would be empty)