Tracking issue: annotations CLI config
See original GitHub issueFor discussion. cc @liaprins-czi
Disable annotations flag
- Swap logic of the
--annotations
flag
Current behavior:
--experimental-annotations Enable user annotation of data. [default: False]
Desired behavior:
--disable-annotations Disable in-app annotation of data. [default: False]
Naming
- Rename
--annotations-file
to--annotations-input-file
- Remove
experimental
from all args
Defaults
- If no input file is specified, prompt the user for a name on startup (including their unique hash)
- If no output dir is specified, default to (1) h5ad directory if local and available; (2) cwd if not
Misc
- Make sure the docs are updated
- Update tests!
Issue Analytics
- State:
- Created 4 years ago
- Reactions:1
- Comments:14 (12 by maintainers)
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That’s possible, although in this case I personally think it’s higher value to keep the h5ad and the annotations csv together whenever possible. I’ll defer to @liaprins-czi on this one 😃
sure, drop me an issue and flag it for 0.15. I probably won’t get to it until later this week