Lightrun Answers was designed to reduce the constant googling that comes with debugging 3rd party libraries. It collects links to all the places you might be looking at while hunting down a tough bug.
And, if you’re still stuck at the end, we’re happy to hop on a call to see how we can help out.
Feature request: Update Drosophila genome build to support dm6
See original GitHub issueHi @chapmanb, I’m using the pre-built reference Drosophila genome for a few experiments, and it’d be helpful to add support for dm6 (Aug 2014) in place of the current dm3 (Apr 2006) build. How do I go about submitting a pull request for a genome build update?
Also, bcbio has some genome-specific calculations for ChIP-seq that need to be accounted for, so that would need to be updated as well for dm6 (see macs2.py for example).
For reference, here are some relevant files:
Issue Analytics
- State:
- Created 4 years ago
- Comments:5 (2 by maintainers)
Top Results From Across the Web
Top Related Medium Post
Top Related StackOverflow Question
Troubleshoot Live Code
Top Related Reddit Thread
Top Related Hackernoon Post
Top Related Tweet
Top Related Dev.to Post
Top Related Hashnode Post
Hi Mike,
I added support for BDGP6 and build the transcriptome against Ensembl release 95, so you should be all good to go for upgrading.
Perfect thanks @roryk