Feature request: Update Drosophila genome build to support dm6
See original GitHub issueHi @chapmanb, I’m using the pre-built reference Drosophila genome for a few experiments, and it’d be helpful to add support for dm6 (Aug 2014) in place of the current dm3 (Apr 2006) build. How do I go about submitting a pull request for a genome build update?
Also, bcbio has some genome-specific calculations for ChIP-seq that need to be accounted for, so that would need to be updated as well for dm6 (see macs2.py
for example).
For reference, here are some relevant files:
Issue Analytics
- State:
- Created 4 years ago
- Comments:5 (2 by maintainers)
Top Results From Across the Web
Release 6 plus ISO1 MT - dm6 - Genome - Assembly - NCBI
Drosophila melanogaster (fruit fly) genome assembly Release 6 plus ISO1 MT (dm6) from The FlyBase Consortium/Berkeley Drosophila Genome Project/Celera ...
Read more >FlyBase:FAQ
FlyBase stopped supporting gene model annotation and genome assembly information for species other than Drosophila melanogaster in Flybase ...
Read more >chromosome-scale genome assembly of a single outbred ...
Here we demonstrate the feasibility of creating a chromosome scale assembly using a hybrid method for a low input sample, a single outbred...
Read more >D. melanogaster dm6 chr2L:826001-851000 UCSC Genome ...
Click on a feature for details. Shift+click+drag to zoom in. Click grey side bars for track options. Drag side bars or labels up...
Read more >Genome build information is an essential part of genomic track ...
Therefore, for files that exclusively provide data in the form of coordinates on a reference genome, such as BED, WIG or GFF, the...
Read more >
Top Related Medium Post
No results found
Top Related StackOverflow Question
No results found
Troubleshoot Live Code
Lightrun enables developers to add logs, metrics and snapshots to live code - no restarts or redeploys required.
Start Free
Top Related Reddit Thread
No results found
Top Related Hackernoon Post
No results found
Top Related Tweet
No results found
Top Related Dev.to Post
No results found
Top Related Hashnode Post
No results found
Hi Mike,
I added support for BDGP6 and build the transcriptome against Ensembl release 95, so you should be all good to go for upgrading.
Perfect thanks @roryk