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Delete case with display id deletes case but fails to delete variants..

See original GitHub issue

I haven’t really investigated this, just throwing it out:

 scout --demo --loglevel DEBUG delete case -i cust000 -d 643594 
2020-02-13 14:28:20 k1315C02VR0WRHTDH.local scout.commands.base[19961] INFO Running scout version 4.11
2020-02-13 14:28:20 k1315C02VR0WRHTDH.local scout.commands.base[19961] DEBUG Debug logging enabled.
2020-02-13 14:28:20 k1315C02VR0WRHTDH.local scout.commands.delete.delete_command[19961] INFO Running deleting case None
2020-02-13 14:28:20 k1315C02VR0WRHTDH.local scout.adapter.mongo.case[19961] INFO Deleting case 643594 institute cust000
2020-02-13 14:28:20 k1315C02VR0WRHTDH.local scout.adapter.mongo.variant[19961] INFO Deleting old clinical  variants for case None
2020-02-13 14:28:20 k1315C02VR0WRHTDH.local scout.adapter.mongo.variant[19961] INFO 0 variants deleted
2020-02-13 14:28:20 k1315C02VR0WRHTDH.local scout.adapter.mongo.variant[19961] INFO Deleting old research  variants for case None
2020-02-13 14:28:20 k1315C02VR0WRHTDH.local scout.adapter.mongo.variant[19961] INFO 0 variants deleted

The case disappears, not variants. On re-load, all is ok except for multiple already existing vars:

2020-02-13 14:29:48 k1315C02VR0WRHTDH.local scout.adapter.mongo.variant_loader[19969] DEBUG Loading variant bulk
2020-02-13 14:29:48 k1315C02VR0WRHTDH.local scout.adapter.mongo.variant_loader[19969] DEBUG Upserting variant e287358e4abec884c39a4ed4363cc130
2020-02-13 14:29:48 k1315C02VR0WRHTDH.local scout.adapter.mongo.variant_loader[19969] DEBUG Variant e287358e4abec884c39a4ed4363cc130 already exists in database