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Dismiss variant bug

See original GitHub issue

Full error:

2020-11-04 16:23:42,629 - scout.server.app - ERROR: Exception on /cust004/120701400232fam/variants [POST] [in /home/hiseq.clinical/miniconda/envs/prod/lib/python3.6/site-packages/flask/app.py:1892]
Traceback (most recent call last):
  File "/home/hiseq.clinical/miniconda/envs/prod/lib/python3.6/site-packages/flask/app.py", line 2447, in wsgi_app
    response = self.full_dispatch_request()
  File "/home/hiseq.clinical/miniconda/envs/prod/lib/python3.6/site-packages/flask/app.py", line 1952, in full_dispatch_request
    rv = self.handle_user_exception(e)
  File "/home/hiseq.clinical/miniconda/envs/prod/lib/python3.6/site-packages/flask/app.py", line 1821, in handle_user_exception
    reraise(exc_type, exc_value, tb)
  File "/home/hiseq.clinical/miniconda/envs/prod/lib/python3.6/site-packages/flask/_compat.py", line 39, in reraise
    raise value
  File "/home/hiseq.clinical/miniconda/envs/prod/lib/python3.6/site-packages/flask/app.py", line 1950, in full_dispatch_request
    rv = self.dispatch_request()
  File "/home/hiseq.clinical/miniconda/envs/prod/lib/python3.6/site-packages/flask/app.py", line 1936, in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
  File "/home/hiseq.clinical/SERVER/apps/scout/git/scout/scout/server/utils.py", line 23, in decorated_function
    context = func(*args, **kwargs)
  File "/home/hiseq.clinical/SERVER/apps/scout/git/scout/scout/server/blueprints/variants/views.py", line 70, in variants
    request.form.getlist("dismiss_choices"),
  File "/home/hiseq.clinical/SERVER/apps/scout/git/scout/scout/server/blueprints/variants/controllers.py", line 904, in dismiss_variant_list
    institute_obj, case_obj, user_obj, link, variant_obj, dismiss_reasons
  File "/home/hiseq.clinical/SERVER/apps/scout/git/scout/scout/adapter/mongo/variant_events.py", line 704, in update_dismiss_variant
    variant["dismiss_variant"], variant["display_name"]
KeyError: 'dismiss_variant'

Issue Analytics

State:
Created 3 years ago
Comments:5 (3 by maintainers)

Top GitHub Comments

1reaction

northwestwitchcommented, Nov 5, 2020

I’ve just realized that was already fixed in #2151 (by me! 😆 ) Perhaps we should plan a release next week? We have some fixes and new features that are not in production yet!

0reactions

northwestwitchcommented, Nov 5, 2020

Nope