question-mark
Stuck on an issue?

Lightrun Answers was designed to reduce the constant googling that comes with debugging 3rd party libraries. It collects links to all the places you might be looking at while hunting down a tough bug.

And, if you’re still stuck at the end, we’re happy to hop on a call to see how we can help out.

Error when updating gene panel

See original GitHub issue
2018-02-16 12:18:09,659 - scout.server.app - ERROR: Exception on /panels/5a782ffc124f63138ce1ff86 [POST] [in python3.5/site-packages/flask/app.py:1587]
Traceback (most recent call last):
  File "python3.5/site-packages/flask/app.py", line 1988, in wsgi_app
    response = self.full_dispatch_request()
  File "python3.5/site-packages/flask/app.py", line 1641, in full_dispatch_request
    rv = self.handle_user_exception(e)
  File "python3.5/site-packages/flask/app.py", line 1544, in handle_user_exception
    reraise(exc_type, exc_value, tb)
  File "python3.5/site-packages/flask/_compat.py", line 33, in reraise
    raise value
  File "python3.5/site-packages/flask/app.py", line 1639, in full_dispatch_request
    rv = self.dispatch_request()
  File "python3.5/site-packages/flask/app.py", line 1625, in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
  File "scout/scout/server/utils.py", line 19, in decorated_function
    context = f(*args, **kwargs)
  File "scout/scout/server/blueprints/panels/views.py", line 68, in panel
    hgnc_id = int(raw_hgnc_id)
ValueError: invalid literal for int() with base 10: 'GFM1'

Issue Analytics

  • State:closed
  • Created 6 years ago
  • Comments:6 (4 by maintainers)

github_iconTop GitHub Comments

1reaction
moonsocommented, Feb 23, 2018

Thank you @northwestwitch ! Just shout at me if you need any help. I’m not sure but I would recommend you to look at https://flask-wtf.readthedocs.io/en/stable/

0reactions
northwestwitchcommented, Feb 23, 2018

I can take a look at it!

Read more comments on GitHub >

github_iconTop Results From Across the Web

Utility of Gene Panels for the Diagnosis of Inborn Errors ... - NCBI
First, the causative gene may not be included in the panel design. This underscores the importance of periodic updating of targeted gene panels....
Read more >
Sources of Error in Mammalian Genetic Screens | G3 Genes
Here, we report several sources of error common to pooled genetic screening techniques used in mammalian cell culture systems, and demonstrate methods to ......
Read more >
Widespread false gene gains caused by duplication errors in ...
Whole genome alignments revealed that 4 to 16% of the sequences are falsely duplicated in the previous assemblies, impacting hundreds to ...
Read more >
Clinical Utility of Whole Exome Sequencing and Targeted ...
Here we report on an 8-year experience using two different NGS technologies, namely research-based WES and targeted gene panels, in patients ...
Read more >
Genetic testing in patients with a suspected primary ...
All topics are updated as new evidence becomes available and our peer review ... One weakness of panel genetic testing is that the...
Read more >

github_iconTop Related Medium Post

No results found

github_iconTop Related StackOverflow Question

No results found

github_iconTroubleshoot Live Code

Lightrun enables developers to add logs, metrics and snapshots to live code - no restarts or redeploys required.
Start Free

github_iconTop Related Reddit Thread

No results found

github_iconTop Related Hackernoon Post

No results found

github_iconTop Related Tweet

No results found

github_iconTop Related Dev.to Post

No results found

github_iconTop Related Hashnode Post

No results found