question-mark
Stuck on an issue?

Lightrun Answers was designed to reduce the constant googling that comes with debugging 3rd party libraries. It collects links to all the places you might be looking at while hunting down a tough bug.

And, if you’re still stuck at the end, we’re happy to hop on a call to see how we can help out.

Persistent filters, similar to gene panel

See original GitHub issue

@dnil 's idea from Scout user meeting actually, right?

I’d like to be able to save filters and have filter maintainers, this is most likely not so hard, right? Or even better, upload filters via CLI. If this happens, we can have filters in the Order similar to what is done for in silico gene panels for rare-disease (MIP).

A second thing I’d like to have, which might be a bit hard is the followin:

To be able to load a filter, click button to pin’em all for the report. e.g. I have used a somatic_filter_ffpe Version 1.0 and I see that only 10 variants are there. And now I want to create a Scout report for these variants with content of the filter used. In other words, I want to see which filter and which version was used to generate this result. This is loosely related to https://github.com/Clinical-Genomics/scout/issues/1915 .

Issue Analytics

  • State:closed
  • Created 3 years ago
  • Comments:8 (4 by maintainers)

github_iconTop GitHub Comments

2reactions
dnilcommented, May 5, 2021

Filters can now be locked and audited on general report. I bailed on the json load part. Do ping again if it would be really helpful. Also as mentioned above, pinning multiple might hitchhike on the dismiss dialog, but easily becomes a bit much. Lets revisit if there are more requests.

1reaction
hassanfacommented, May 5, 2021

Woop woop! 🥳

Read more comments on GitHub >

github_iconTop Results From Across the Web

GATK hard filtering: tunable parameters to improve variant ...
GATK hard filtering: tunable parameters to improve variant calling for next generation sequencing targeted gene panel data.
Read more >
Comprehensive gene panels provide advantages over clinical ...
An alternative approach to WES is gene panels in which an assortment of genes deemed relevant to a particular phenotype are sequenced in ......
Read more >
Gene Panels: Filtering and Expertises - GeneTalk
You can list, for example, all genes related to a molecular pathway or genes associated with a certain phenotype in a gene panel...
Read more >
identifying genes with similar continuous trait fingerprints from ...
Here, we present Gene-SCOUT, a tool used to identify genes with similar continuous trait fingerprints to a gene of interest.
Read more >
Comparative analysis of targeted next-generation sequencing ...
Comparative analysis of targeted next-generation sequencing panels for the detection of gene mutations in chronic lymphocytic leukemia: an ...
Read more >

github_iconTop Related Medium Post

No results found

github_iconTop Related StackOverflow Question

No results found

github_iconTroubleshoot Live Code

Lightrun enables developers to add logs, metrics and snapshots to live code - no restarts or redeploys required.
Start Free

github_iconTop Related Reddit Thread

No results found

github_iconTop Related Hackernoon Post

No results found

github_iconTop Related Tweet

No results found

github_iconTop Related Dev.to Post

No results found

github_iconTop Related Hashnode Post

No results found