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Bioconda installation is confusing to call (ThermoRawFileParser.sh)

See original GitHub issue

If installed with bioconda, the package’s binary is called ThermoRawFileParser.sh, which means the program can only be started by calling ThermoRawFileParser.sh, which seems like a pretty confusing name to me. I would definitely remove the .sh extension, and maybe add a second binary called thermorawfileparser, so lower case also works.

❯ thermorawfileparser
zsh: command not found: thermorawfileparser
❯ ThermoRawFileParser
zsh: command not found: ThermoRawFileParser
❯ thermorawfileparser.sh
zsh: command not found: thermorawfileparser.sh
❯ ThermoRawFileParser.sh
-i, --input or -d, --input_directory: specify an input file or an input directory
...

Issue Analytics

  • State:closed
  • Created 3 years ago
  • Comments:6 (4 by maintainers)

github_iconTop GitHub Comments

1reaction
bgrueningcommented, Jul 10, 2020

thermorawfileparser

I think this is fine.

0reactions
RalfGcommented, Sep 22, 2020

@caetera, yes, this has been merged in bioconda/bioconda-recipes#23142, so this can be closed.

I definitely don’t know all 😛 But I’ll take a look.

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