Stopped running "final_logging"
See original GitHub issueThis may be related to #157 but I don’t want to make assumptions.
A different job (chr20) appears to be complete (it has finished delocalization) but appears to still be running because the “final_logging” could not be found (but still had an exit status of 0!?).
done: false
metadata:
'@type': type.googleapis.com/google.genomics.v2alpha1.Metadata
createTime: '2019-05-22T16:35:10.783867Z'
events:
- description: |-
Stopped running "final_logging": environment: line 18: log_info: command not found
environment: line 18: log_info: command not found
environment: line 18: log_info: command not found
details:
'@type': type.googleapis.com/google.genomics.v2alpha1.ContainerStoppedEvent
actionId: 8
exitStatus: 0
stderr: |
environment: line 18: log_info: command not found
environment: line 18: log_info: command not found
environment: line 18: log_info: command not found
timestamp: '2019-05-22T23:41:44.276607Z'
- description: Started running "final_logging"
details:
'@type': type.googleapis.com/google.genomics.v2alpha1.ContainerStartedEvent
actionId: 8
ipAddress: ''
portMappings: {}
timestamp: '2019-05-22T23:41:39.647535Z'
- description: Stopped running "delocalization"
details:
'@type': type.googleapis.com/google.genomics.v2alpha1.ContainerStoppedEvent
actionId: 7
exitStatus: 0
stderr: ''
timestamp: '2019-05-22T23:41:38.546159Z'
Issue Analytics
- State:
- Created 4 years ago
- Comments:7 (3 by maintainers)
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Yes!
Thanks for reporting the problem. The
log_info
problem was introduced in d3269e53a3dd68063a94b474fc1efd4825130259 and would be for alldsub
jobs.The problem of the VM continuing to run should be unrelated. You’ll see the same error message in the underlying operation for all of your
dsub
jobs.If the VM continues to run, you will likely need to terminate it manually and report the problem to Google.