Spark Version 2.3.0 it not work
See original GitHub issueIn my sbt having following contain :
val sparkVersion = "2.3.0"
lazy val sparkDependencies = Seq(
"org.apache.spark" %% "spark-core" % sparkVersion ,
"org.apache.spark" %% "spark-sql" % sparkVersion ,
"org.apache.spark" %% "spark-graphx" % sparkVersion
)
resolvers ++= Seq("Typesafe Repo" at "http://repo.typesafe.com/typesafe/releases/",
"Redshift" at "http://redshift-maven-repository.s3-website-us-east-1.amazonaws.com/release"
)
lazy val requiredDependencies = Seq(
"com.typesafe" % "config" % "1.3.2",
"com.fasterxml.uuid" % "java-uuid-generator" % "3.1.5",
"com.amazonaws" % "aws-java-sdk-athena" % "1.11.325",
"com.databricks" %% "spark-redshift" % "3.0.0-preview1",
"com.amazon.redshift" % "redshift-jdbc41" % "1.2.1.1001"
)
// change compile to provided at the time of jar build using sbt assembly command
libraryDependencies ++= requiredDependencies ++
sparkDependencies.map(_ % "provided")
and I write data in redshift as below :
df.write.format("com.databricks.spark.redshift")
.option("url", jdbcURL)
.option("dbtable", "student")
.option("tempdir", "s3n://id-graph-test-data/tempDir")
.option("temporary_aws_access_key_id", awsAccessKey)
.option("temporary_aws_secret_access_key", awsSecretKey)
.option("temporary_aws_session_token", token)
.option("extracopyoptions", "region 'us-east-1'")
.mode(SaveMode.Append)
.save()
but it show following error :
org.apache.spark.sql.execution.datasources.FileFormatWriter$.org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask(FileFormatWriter.scala:285) at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1.apply(FileFormatWriter.scala:197) at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1.apply(FileFormatWriter.scala:196) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87) at org.apache.spark.scheduler.Task.run(Task.scala:109) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) Caused by: java.lang.AbstractMethodError: org.apache.spark.sql.execution.datasources.OutputWriterFactory.getFileExtension(Lorg/apache/hadoop/mapreduce/TaskAttemptContext;)Ljava/lang/String; at org.apache.spark.sql.execution.datasources.FileFormatWriter$SingleDirectoryWriteTask.newOutputWriter(FileFormatWriter.scala:361) at org.apache.spark.sql.execution.datasources.FileFormatWriter$SingleDirectoryWriteTask.execute(FileFormatWriter.scala:378) at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask$3.apply(FileFormatWriter.scala:269) at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask$3.apply(FileFormatWriter.scala:267) at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1411) at org.apache.spark.sql.execution.datasources.FileFormatWriter$.org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask(FileFormatWriter.scala:272) … 8 more
Driver stacktrace: 18/05/23 11:29:14 INFO DAGScheduler: Job 11 failed: save at RedshiftWriter.scala:295, took 23.034150 s 18/05/23 11:29:14 ERROR FileFormatWriter: Aborting job null. org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 24.0 failed 4 times, most recent failure: Lost task 0.3 in stage 24.0 (TID 640, ip-10-10-9-168.ec2.internal, executor 1): org.apache.spark.SparkException: Task failed while writing rows. at org.apache.spark.sql.execution.datasources.FileFormatWriter$.org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask(FileFormatWriter.scala:285) at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1.apply(FileFormatWriter.scala:197) at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1.apply(FileFormatWriter.scala:196) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87) at org.apache.spark.scheduler.Task.run(Task.scala:109) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) Caused by: java.lang.AbstractMethodError: org.apache.spark.sql.execution.datasources.OutputWriterFactory.getFileExtension(Lorg/apache/hadoop/mapreduce/TaskAttemptContext;)Ljava/lang/String; at org.apache.spark.sql.execution.datasources.FileFormatWriter$SingleDirectoryWriteTask.newOutputWriter(FileFormatWriter.scala:361) at org.apache.spark.sql.execution.datasources.FileFormatWriter$SingleDirectoryWriteTask.execute(FileFormatWriter.scala:378) at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask$3.apply(FileFormatWriter.scala:269) at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask$3.apply(FileFormatWriter.scala:267) at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1411) at org.apache.spark.sql.execution.datasources.FileFormatWriter$.org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask(FileFormatWriter.scala:272) … 8 more
Driver stacktrace: at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1750) at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1738) at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1737) at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59) at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48) at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1737) at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:871) at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:871) at scala.Option.foreach(Option.scala:257) at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:871) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1971) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1920) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1909) at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48) at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:682) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2027) at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:194) at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand.run(InsertIntoHadoopFsRelationCommand.scala:154) at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult$lzycompute(commands.scala:104) at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult(commands.scala:102) at org.apache.spark.sql.execution.command.DataWritingCommandExec.doExecute(commands.scala:122) at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:131) at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:127) at org.apache.spark.sql.execution.SparkPlan$$anonfun$executeQuery$1.apply(SparkPlan.scala:155) at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151) at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:152) at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:127) at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:80) at org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:80) at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:654) at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:654) at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:77) at org.apache.spark.sql.DataFrameWriter.runCommand(DataFrameWriter.scala:654) at org.apache.spark.sql.DataFrameWriter.saveToV1Source(DataFrameWriter.scala:273) at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:267) at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:225) at com.databricks.spark.redshift.RedshiftWriter.unloadData(RedshiftWriter.scala:295) at com.databricks.spark.redshift.RedshiftWriter.saveToRedshift(RedshiftWriter.scala:392) at com.databricks.spark.redshift.DefaultSource.createRelation(DefaultSource.scala:108) at org.apache.spark.sql.execution.datasources.SaveIntoDataSourceCommand.run(SaveIntoDataSourceCommand.scala:46) at org.apache.spark.sql.execution.command.ExecutedCommandExec.sideEffectResult$lzycompute(commands.scala:70) at org.apache.spark.sql.execution.command.ExecutedCommandExec.sideEffectResult(commands.scala:68) at org.apache.spark.sql.execution.command.ExecutedCommandExec.doExecute(commands.scala:86) at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:131) at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:127) at org.apache.spark.sql.execution.SparkPlan$$anonfun$executeQuery$1.apply(SparkPlan.scala:155) at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151) at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:152) at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:127) at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:80) at org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:80) at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:654) at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:654) at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:77) at org.apache.spark.sql.DataFrameWriter.runCommand(DataFrameWriter.scala:654) at org.apache.spark.sql.DataFrameWriter.saveToV1Source(DataFrameWriter.scala:273) at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:267) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.apache.spark.deploy.yarn.ApplicationMaster$$anon$4.run(ApplicationMaster.scala:706) Caused by: org.apache.spark.SparkException: Task failed while writing rows. at org.apache.spark.sql.execution.datasources.FileFormatWriter$.org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask(FileFormatWriter.scala:285) at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1.apply(FileFormatWriter.scala:197) at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1.apply(FileFormatWriter.scala:196) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87) at org.apache.spark.scheduler.Task.run(Task.scala:109) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) Caused by: java.lang.AbstractMethodError: org.apache.spark.sql.execution.datasources.OutputWriterFactory.getFileExtension(Lorg/apache/hadoop/mapreduce/TaskAttemptContext;)Ljava/lang/String; at org.apache.spark.sql.execution.datasources.FileFormatWriter$SingleDirectoryWriteTask.newOutputWriter(FileFormatWriter.scala:361) at org.apache.spark.sql.execution.datasources.FileFormatWriter$SingleDirectoryWriteTask.execute(FileFormatWriter.scala:378) at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask$3.apply(FileFormatWriter.scala:269) at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask$3.apply(FileFormatWriter.scala:267) at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1411) at org.apache.spark.sql.execution.datasources.FileFormatWriter$.org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask(FileFormatWriter.scala:272) … 8 more
Issue Analytics
- State:
- Created 5 years ago
- Reactions:3
- Comments:13
Top GitHub Comments
I believe this error is actually associated with an avro formatting problem.
I was able to overcome this error and write to redshift by switching to the csv gzip format (also worked for raw csv) with the following
Maybe there’s an empty table, find it and rewrite it.