Installation following README doesn't work
See original GitHub issueHopefully this will be fixed in #1871 As a reference I record the problem I am facing with. Currently I cannot install deepchem either by pip or by conda. The CI was broken where installation is by the scripts:
conda install -y -q scikit-learn=0.22
conda install -y -q -c deepchem -c rdkit -c conda-forge -c omnia deepchem=2.3.0
The error was that tensorflow is not installed. So did you remove the dependency from anaconda in 2.3.0?
By the way, I tried using pip but failed (#1842)
pip install scikit-learn==0.22 && \
conda install -y -c rdkit rdkit && \
pip install joblib pandas tensorflow pillow deepchem
but the output was
ImportError: cannot import name 'NewCheckpointReader' from 'tensorflow.python.pywrap_tensorflow_internal' (/miniconda/lib/python3.7/site-packages/tensorflow/python/pywrap_tensorflow_internal.py)
All these two ways were exactly the same as the document but nothing works. And a stable version is highly required including well defined dependencies. For example, scikit-learn should be <0.23 in deepchem 2.3.0 due to joblib (#1861)
Issue Analytics
- State:
- Created 3 years ago
- Comments:5 (3 by maintainers)
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Top GitHub Comments
Thank you. I reset my environment and started all over. Now everything worked.
BTW, one thing I am not sure whether it was important:
installed
rdkit 20170901
, in which I could not userdkit.Chem.Draw
(see the issue) So I unsintalledrdkit
and didconda install -c conda-forge rdkit
to get the2020.03.4
version.So far so good.
Maybe this would be useful to someone.
Sorry for your inconvinience 🙇♂️ Maybe you can install by using the following command. deepchem v2.3.0 requires tensorflow v1.