failed to build docker

Wonderful repo !!! Thanks so much for the Alphafold2 Team. And I have a problem in building alphafold docker. Error information is shown below. It seems that the related cuda resource is not found. Thanks all.

$ docker build -f docker/Dockerfile -t alphafold .

Sending build context to Docker daemon  12.69MB
Step 1/19 : ARG CUDA=11.0
Step 2/19 : FROM nvidia/cuda:${CUDA}-base
 ---> 2ec708416bb8
Step 3/19 : ARG CUDA
 ---> Using cache
 ---> 076eace7d488
Step 4/19 : SHELL ["/bin/bash", "-c"]
 ---> Using cache
 ---> b57b88dc2b9a
Step 5/19 : RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y       build-essential       cmake       cuda-command-line-tools-${CUDA/./-}       git       hmmer       kalign       tzdata       wget     && rm -rf /var/lib/apt/lists/*
 ---> Running in 52e953f25c2b
...
...


E: Failed to fetch https://developer.download.nvidia.cn/compute/cuda/repos/ubuntu2004/x86_64/by-hash/SHA256/27b2dbb347d54776dec155d98e1eefbde6c10a3fd1295007c3e836cfd9b98522  404  Not Found [IP: 58.205.210.80 443]
E: Some index files failed to download. They have been ignored, or old ones used instead.

[wangyanmin123]

Alphafold2 Team Hello Alphafold2 Team, 1>I’m using docker build -f docker/Dockerfile -t alphafold. According to your method, ping developer.download.nvidia.com and the IP obtained by adding /etc/hosts still reports an error, and every time you ping developer. Download.nvidia.com gets different ips, please help，Thank you

docker build -f docker/Dockerfile -t alphafold . Sending build context to Docker daemon 13.04MB Step 1/19 : ARG CUDA=11.0 Step 2/19 : FROM nvidia/cuda:${CUDA}-base —> 2ec708416bb8 Step 3/19 : ARG CUDA —> Using cache —> a1f524bee0b4 Step 4/19 : SHELL [“/bin/bash”, “-c”] —> Using cache —> 09dc16b21719 Step 5/19 : RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y build-essential cmake cuda-command-line-tools-${CUDA/./-} git
hmmer kalign tzdata wget && rm -rf /var/lib/apt/lists/* —> Running in 2433b949ee79 Get:1 http://security.ubuntu.com/ubuntu focal-security InRelease [114 kB] Get:3 http://archive.ubuntu.com/ubuntu focal InRelease [265 kB] Ign:2 https://developer.download.nvidia.cn/compute/cuda/repos/ubuntu2004/x86_64 InRelease Get:4 https://developer.download.nvidia.cn/compute/cuda/repos/ubuntu2004/x86_64 Release [697 B] Get:5 https://developer.download.nvidia.cn/compute/cuda/repos/ubuntu2004/x86_64 Release.gpg [836 B] Ign:6 https://developer.download.nvidia.cn/compute/cuda/repos/ubuntu2004/x86_64 Packages Ign:6 https://developer.download.nvidia.cn/compute/cuda/repos/ubuntu2004/x86_64 Packages Ign:6 https://developer.download.nvidia.cn/compute/cuda/repos/ubuntu2004/x86_64 Packages Err:6 https://developer.download.nvidia.cn/compute/cuda/repos/ubuntu2004/x86_64 Packages 404 Not Found [IP: 124.132.138.69 443] Get:7 http://archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] Get:8 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [782 kB] Get:9 http://archive.ubuntu.com/ubuntu focal-backports InRelease [101 kB] Get:10 http://archive.ubuntu.com/ubuntu focal/multiverse amd64 Packages [177 kB] Get:11 http://archive.ubuntu.com/ubuntu focal/restricted amd64 Packages [33.4 kB] Get:12 http://archive.ubuntu.com/ubuntu focal/universe amd64 Packages [11.3 MB] Get:13 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [930 kB] Get:14 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 Packages [27.6 kB] Get:15 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [368 kB] Get:16 http://archive.ubuntu.com/ubuntu focal/main amd64 Packages [1275 kB] Get:17 http://archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 Packages [32.0 kB] Get:18 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [1367 kB] Get:19 http://archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [416 kB] Get:20 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [1053 kB] Get:21 http://archive.ubuntu.com/ubuntu focal-backports/main amd64 Packages [2668 B] Get:22 http://archive.ubuntu.com/ubuntu focal-backports/universe amd64 Packages [6303 B] Fetched 18.4 MB in 1min 44s (176 kB/s) Reading package lists… E: Failed to fetch https://developer.download.nvidia.cn/compute/cuda/repos/ubuntu2004/x86_64/by-hash/SHA256/27b2dbb347d54776dec155d98e1eefbde6c10a3fd1295007c3e836cfd9b98522 404 Not Found [IP: 124.132.138.69 443]E: Some index files failed to download. They have been ignored, or old ones used instead.

[root@fat03 alphafold]# ping developer.download.nvidia.com PING developer.download.nvidia.com.zengslb.com (192.254.94.202) 56(84) bytes of data. 64 bytes from 192.254.94.202 (192.254.94.202): icmp_seq=1 ttl=53 time=46.0 ms 64 bytes from 192.254.94.202 (192.254.94.202): icmp_seq=2 ttl=53 time=45.7 ms 64 bytes from 192.254.94.202 (192.254.94.202): icmp_seq=3 ttl=53 time=45.9 ms ^C — developer.download.nvidia.com.zengslb.com ping statistics — 3 packets transmitted, 3 received, 0% packet loss, time 2003ms rtt min/avg/max/mdev = 45.774/45.906/46.036/0.205 ms [root@fat03 alphafold]# vim /etc/hosts [root@fat03 alphafold]# ping developer.download.nvidia.com PING developer.download.nvidia.com.zengslb.com (45.43.32.210) 56(84) bytes of data. 64 bytes from 45.43.32.210 (45.43.32.210): icmp_seq=1 ttl=53 time=46.8 ms 64 bytes from 45.43.32.210 (45.43.32.210): icmp_seq=2 ttl=53 time=46.7 ms ^C — developer.download.nvidia.com.zengslb.com ping statistics — 2 packets transmitted, 2 received, 0% packet loss, time 1001ms rtt min/avg/max/mdev = 46.759/46.786/46.813/0.027 ms [root@fat03 alphafold]# vim /etc/hosts [root@fat03 alphafold]# vim /etc/hosts [root@fat03 alphafold]# ping developer.download.nvidia.com PING developer.download.nvidia.com.zengslb.com (129.227.48.133) 56(84) bytes of data. 64 bytes from 129.227.48.133 (129.227.48.133): icmp_seq=1 ttl=45 time=72.4 ms 64 bytes from 129.227.48.133 (129.227.48.133): icmp_seq=2 ttl=45 time=73.6 ms

I use docker pull fanxuezhe/alphafold_test The download is also wrong [root@fat03 alphafold]# docker pull fanxuezhe/alphafold_test Using default tag: latest Error response from daemon: manifest for fanxuezhe/alphafold_test:latest not found: manifest unknown: manifest unknown

[FizzerYu]

Try this: Modify the Dockerfile like this if you are in China:

.................  # some command

RUN echo deb https://developer.download.nvidia.cn/compute/cuda/repos/ubuntu2004/x86_64 / | tee /etc/apt/sources.list.d/cuda.list    # HERE! Add this before apt-get update

RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y \
.................  # some command

And you may also unable to access the github depository. So you can modify the website of https://github.com/soedinglab/hh-suite.git to https://github.com.cnpmjs.org/soedinglab/hh-suite.git