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Investigate BAMStats convert problem
See original GitHub issueRunning dockstore tool convert entry2json --entry quay.io/collaboratory/dockstore-tool-bamstats:1.25-6_1.0 > Dockstore.json as directed here https://staging.dockstore.org/containers/quay.io/collaboratory/dockstore-tool-bamstats:1.25-6_1.0?tab=launch does not work as expected. In the resulting Dockstore.json, each input key is prefixed with ‘BAMStats’, e.g.
“BAMStats/bam_input”: {…}. This causes an error when using this file as an input because an input field called just “bam_input” is expected. The prefixes have to be removed in order for it to run.
┆Issue is synchronized with this Jira Story ┆Fix Versions: Dockstore 1.9 ┆Issue Number: DOCK-980 ┆Sprint: Seabright Sprint 29 Dugong ┆Issue Type: Story
Issue Analytics
- State:
- Created 4 years ago
- Comments:11 (4 by maintainers)
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@denis-yuen moving this to 1.7.x
Confirmed that this is working now on staging (API 1.8.1)