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Document the usage with `python -m`

See original GitHub issue

My project structure:

gfa/ ├── config │ └── settings.yaml ├── init.py ├── main.py ├── resources │ ├── exon_body.bed │ ├── exon_end.bed │ ├── exon_start.bed ├── src │ ├── annotators │ │ ├── get_annots.py │ │ └── init.py │ ├── gfa.py │ ├── preprocess └── tests ├── fixtures │ └── test_bkpt.tsv ├── init.py └── test_get_annots.py

I have a settings.yaml in the config folder with the content below

---
exon_region_dict
  start : '../resources/exon_start.bed'
  stop : '../resources/exon_stop.bed'
  body : '../resources/exon_body.bed'

I call settings.EXON_REGION_DICT in get_annots.py but I get this error line 113, in getattr return getattr(self._wrapped, name) AttributeError: ‘Settings’ object has no attribute ‘EXON_REGION_DICT’

Issue Analytics

State:
Created 3 years ago
Comments:11 (7 by maintainers)

Top GitHub Comments

1reaction

gopi1616commented, Jul 15, 2020

Resolved after adding the setting.yaml path to .env file in the root dir

0reactions

stale[bot]commented, Jun 2, 2022

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

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