How to display differences from Variant Calling File?
See original GitHub issueDear,
I would like to use your awesome library with pysam
in order to display the difference between two sequences.
I see they are GeneBlock
for this purpose. So how to create a such instance from a list of variations ?
Thanks
best regards
Issue Analytics
- State:
- Created 3 years ago
- Comments:5 (3 by maintainers)
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Thanks. The script will be released freely soon 😃
+1 for @veghp 's answer above, please share the script if you can! Btw @veghp did you guess what famous sequence this is?
One way is to use Matplotlib’s
ax.set_xticks([list of indices])
, but this may create collisions if your indices are too close from one another. Another way is to add the index to the feature label, for instance"535\nReplaced G->T"
. This way Dna Features Viewer should detect close labels and display them under one another. Cosmetic pro tip: you can useax2.invert_yaxis()
on the bottom ax so that theReplaced G->T
annotations will appear below the ax rather than above.