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Unable to compile pointnet2

See original GitHub issue

When running:

I get the error:

(votenet) uma@uma-desktop:~/UMA/3ddl/votenet/pointnet2$ python setup.py install
running install
running bdist_egg
running egg_info
writing pointnet2.egg-info/PKG-INFO
writing dependency_links to pointnet2.egg-info/dependency_links.txt
writing top-level names to pointnet2.egg-info/top_level.txt
reading manifest file 'pointnet2.egg-info/SOURCES.txt'
writing manifest file 'pointnet2.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_ext
building 'pointnet2._ext' extension
Emitting ninja build file /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/build.ninja...
Compiling objects...
Allowing ninja to set a default number of workers... (overridable by setting the environment variable MAX_JOBS=N)
[1/9] c++ -MMD -MF /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/group_points.o.d -pthread -B /home/uma/miniconda3/envs/votenet/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/TH -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.2/include -I/home/uma/miniconda3/envs/votenet/include/python3.7m -c -c /home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/group_points.cpp -o /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/group_points.o -O2 -I_ext_src/include -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=_ext -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
FAILED: /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/group_points.o
c++ -MMD -MF /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/group_points.o.d -pthread -B /home/uma/miniconda3/envs/votenet/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/TH -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.2/include -I/home/uma/miniconda3/envs/votenet/include/python3.7m -c -c /home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/group_points.cpp -o /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/group_points.o -O2 -I_ext_src/include -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=_ext -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
/home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/group_points.cpp:6:10: fatal error: group_points.h: No such file or directory
 #include "group_points.h"
          ^~~~~~~~~~~~~~~~
compilation terminated.
[2/9] c++ -MMD -MF /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/sampling.o.d -pthread -B /home/uma/miniconda3/envs/votenet/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/TH -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.2/include -I/home/uma/miniconda3/envs/votenet/include/python3.7m -c -c /home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/sampling.cpp -o /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/sampling.o -O2 -I_ext_src/include -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=_ext -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
FAILED: /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/sampling.o
c++ -MMD -MF /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/sampling.o.d -pthread -B /home/uma/miniconda3/envs/votenet/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/TH -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.2/include -I/home/uma/miniconda3/envs/votenet/include/python3.7m -c -c /home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/sampling.cpp -o /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/sampling.o -O2 -I_ext_src/include -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=_ext -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
/home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/sampling.cpp:6:10: fatal error: sampling.h: No such file or directory
 #include "sampling.h"
          ^~~~~~~~~~~~
compilation terminated.
[3/9] c++ -MMD -MF /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/ball_query.o.d -pthread -B /home/uma/miniconda3/envs/votenet/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/TH -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.2/include -I/home/uma/miniconda3/envs/votenet/include/python3.7m -c -c /home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/ball_query.cpp -o /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/ball_query.o -O2 -I_ext_src/include -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=_ext -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
FAILED: /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/ball_query.o
c++ -MMD -MF /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/ball_query.o.d -pthread -B /home/uma/miniconda3/envs/votenet/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/TH -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.2/include -I/home/uma/miniconda3/envs/votenet/include/python3.7m -c -c /home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/ball_query.cpp -o /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/ball_query.o -O2 -I_ext_src/include -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=_ext -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
/home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/ball_query.cpp:6:10: fatal error: ball_query.h: No such file or directory
 #include "ball_query.h"
          ^~~~~~~~~~~~~~
compilation terminated.
[4/9] c++ -MMD -MF /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/interpolate.o.d -pthread -B /home/uma/miniconda3/envs/votenet/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/TH -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.2/include -I/home/uma/miniconda3/envs/votenet/include/python3.7m -c -c /home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/interpolate.cpp -o /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/interpolate.o -O2 -I_ext_src/include -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=_ext -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
FAILED: /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/interpolate.o
c++ -MMD -MF /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/interpolate.o.d -pthread -B /home/uma/miniconda3/envs/votenet/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/TH -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.2/include -I/home/uma/miniconda3/envs/votenet/include/python3.7m -c -c /home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/interpolate.cpp -o /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/interpolate.o -O2 -I_ext_src/include -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=_ext -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
/home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/interpolate.cpp:6:10: fatal error: interpolate.h: No such file or directory
 #include "interpolate.h"
          ^~~~~~~~~~~~~~~
compilation terminated.
[5/9] c++ -MMD -MF /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/bindings.o.d -pthread -B /home/uma/miniconda3/envs/votenet/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/TH -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.2/include -I/home/uma/miniconda3/envs/votenet/include/python3.7m -c -c /home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/bindings.cpp -o /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/bindings.o -O2 -I_ext_src/include -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=_ext -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
FAILED: /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/bindings.o
c++ -MMD -MF /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/bindings.o.d -pthread -B /home/uma/miniconda3/envs/votenet/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/TH -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.2/include -I/home/uma/miniconda3/envs/votenet/include/python3.7m -c -c /home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/bindings.cpp -o /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/bindings.o -O2 -I_ext_src/include -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=_ext -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
/home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/bindings.cpp:6:10: fatal error: ball_query.h: No such file or directory
 #include "ball_query.h"
          ^~~~~~~~~~~~~~
compilation terminated.
[6/9] /usr/local/cuda-10.2/bin/nvcc -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/TH -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.2/include -I/home/uma/miniconda3/envs/votenet/include/python3.7m -c -c /home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/interpolate_gpu.cu -o /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/interpolate_gpu.o -D__CUDA_NO_HALF_OPERATORS__ -D__CUDA_NO_HALF_CONVERSIONS__ -D__CUDA_NO_HALF2_OPERATORS__ --expt-relaxed-constexpr --compiler-options ''"'"'-fPIC'"'"'' -O2 -I_ext_src/include -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=_ext -D_GLIBCXX_USE_CXX11_ABI=0 -gencode=arch=compute_75,code=sm_75 -std=c++14
FAILED: /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/interpolate_gpu.o
/usr/local/cuda-10.2/bin/nvcc -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/TH -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.2/include -I/home/uma/miniconda3/envs/votenet/include/python3.7m -c -c /home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/interpolate_gpu.cu -o /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/interpolate_gpu.o -D__CUDA_NO_HALF_OPERATORS__ -D__CUDA_NO_HALF_CONVERSIONS__ -D__CUDA_NO_HALF2_OPERATORS__ --expt-relaxed-constexpr --compiler-options ''"'"'-fPIC'"'"'' -O2 -I_ext_src/include -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=_ext -D_GLIBCXX_USE_CXX11_ABI=0 -gencode=arch=compute_75,code=sm_75 -std=c++14
/home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/interpolate_gpu.cu:10:10: fatal error: cuda_utils.h: No such file or directory
 #include "cuda_utils.h"
          ^~~~~~~~~~~~~~
compilation terminated.
[7/9] /usr/local/cuda-10.2/bin/nvcc -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/TH -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.2/include -I/home/uma/miniconda3/envs/votenet/include/python3.7m -c -c /home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/group_points_gpu.cu -o /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/group_points_gpu.o -D__CUDA_NO_HALF_OPERATORS__ -D__CUDA_NO_HALF_CONVERSIONS__ -D__CUDA_NO_HALF2_OPERATORS__ --expt-relaxed-constexpr --compiler-options ''"'"'-fPIC'"'"'' -O2 -I_ext_src/include -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=_ext -D_GLIBCXX_USE_CXX11_ABI=0 -gencode=arch=compute_75,code=sm_75 -std=c++14
FAILED: /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/group_points_gpu.o
/usr/local/cuda-10.2/bin/nvcc -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/TH -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.2/include -I/home/uma/miniconda3/envs/votenet/include/python3.7m -c -c /home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/group_points_gpu.cu -o /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/group_points_gpu.o -D__CUDA_NO_HALF_OPERATORS__ -D__CUDA_NO_HALF_CONVERSIONS__ -D__CUDA_NO_HALF2_OPERATORS__ --expt-relaxed-constexpr --compiler-options ''"'"'-fPIC'"'"'' -O2 -I_ext_src/include -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=_ext -D_GLIBCXX_USE_CXX11_ABI=0 -gencode=arch=compute_75,code=sm_75 -std=c++14
/home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/group_points_gpu.cu:9:10: fatal error: cuda_utils.h: No such file or directory
 #include "cuda_utils.h"
          ^~~~~~~~~~~~~~
compilation terminated.
[8/9] /usr/local/cuda-10.2/bin/nvcc -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/TH -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.2/include -I/home/uma/miniconda3/envs/votenet/include/python3.7m -c -c /home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/ball_query_gpu.cu -o /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/ball_query_gpu.o -D__CUDA_NO_HALF_OPERATORS__ -D__CUDA_NO_HALF_CONVERSIONS__ -D__CUDA_NO_HALF2_OPERATORS__ --expt-relaxed-constexpr --compiler-options ''"'"'-fPIC'"'"'' -O2 -I_ext_src/include -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=_ext -D_GLIBCXX_USE_CXX11_ABI=0 -gencode=arch=compute_75,code=sm_75 -std=c++14
FAILED: /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/ball_query_gpu.o
/usr/local/cuda-10.2/bin/nvcc -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/TH -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.2/include -I/home/uma/miniconda3/envs/votenet/include/python3.7m -c -c /home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/ball_query_gpu.cu -o /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/ball_query_gpu.o -D__CUDA_NO_HALF_OPERATORS__ -D__CUDA_NO_HALF_CONVERSIONS__ -D__CUDA_NO_HALF2_OPERATORS__ --expt-relaxed-constexpr --compiler-options ''"'"'-fPIC'"'"'' -O2 -I_ext_src/include -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=_ext -D_GLIBCXX_USE_CXX11_ABI=0 -gencode=arch=compute_75,code=sm_75 -std=c++14
/home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/ball_query_gpu.cu:10:10: fatal error: cuda_utils.h: No such file or directory
 #include "cuda_utils.h"
          ^~~~~~~~~~~~~~
compilation terminated.
[9/9] /usr/local/cuda-10.2/bin/nvcc -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/TH -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.2/include -I/home/uma/miniconda3/envs/votenet/include/python3.7m -c -c /home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/sampling_gpu.cu -o /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/sampling_gpu.o -D__CUDA_NO_HALF_OPERATORS__ -D__CUDA_NO_HALF_CONVERSIONS__ -D__CUDA_NO_HALF2_OPERATORS__ --expt-relaxed-constexpr --compiler-options ''"'"'-fPIC'"'"'' -O2 -I_ext_src/include -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=_ext -D_GLIBCXX_USE_CXX11_ABI=0 -gencode=arch=compute_75,code=sm_75 -std=c++14
FAILED: /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/sampling_gpu.o
/usr/local/cuda-10.2/bin/nvcc -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/TH -I/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/include/THC -I/usr/local/cuda-10.2/include -I/home/uma/miniconda3/envs/votenet/include/python3.7m -c -c /home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/sampling_gpu.cu -o /home/uma/UMA/3ddl/votenet/pointnet2/build/temp.linux-x86_64-3.7/_ext_src/src/sampling_gpu.o -D__CUDA_NO_HALF_OPERATORS__ -D__CUDA_NO_HALF_CONVERSIONS__ -D__CUDA_NO_HALF2_OPERATORS__ --expt-relaxed-constexpr --compiler-options ''"'"'-fPIC'"'"'' -O2 -I_ext_src/include -DTORCH_API_INCLUDE_EXTENSION_H '-DPYBIND11_COMPILER_TYPE="_gcc"' '-DPYBIND11_STDLIB="_libstdcpp"' '-DPYBIND11_BUILD_ABI="_cxxabi1011"' -DTORCH_EXTENSION_NAME=_ext -D_GLIBCXX_USE_CXX11_ABI=0 -gencode=arch=compute_75,code=sm_75 -std=c++14
/home/uma/UMA/3ddl/votenet/pointnet2/_ext_src/src/sampling_gpu.cu:9:10: fatal error: cuda_utils.h: No such file or directory
 #include "cuda_utils.h"
          ^~~~~~~~~~~~~~
compilation terminated.
ninja: build stopped: subcommand failed.
Traceback (most recent call last):
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/utils/cpp_extension.py", line 1539, in _run_ninja_build
    env=env)
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/subprocess.py", line 512, in run
    output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command '['ninja', '-v']' returned non-zero exit status 1.

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "setup.py", line 29, in <module>
    'build_ext': BuildExtension
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/setuptools/__init__.py", line 153, in setup
    return distutils.core.setup(**attrs)
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/distutils/core.py", line 148, in setup
    dist.run_commands()
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/distutils/dist.py", line 966, in run_commands
    self.run_command(cmd)
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/distutils/dist.py", line 985, in run_command
    cmd_obj.run()
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/setuptools/command/install.py", line 67, in run
    self.do_egg_install()
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/setuptools/command/install.py", line 109, in do_egg_install
    self.run_command('bdist_egg')
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/distutils/cmd.py", line 313, in run_command
    self.distribution.run_command(command)
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/distutils/dist.py", line 985, in run_command
    cmd_obj.run()
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/setuptools/command/bdist_egg.py", line 167, in run
    cmd = self.call_command('install_lib', warn_dir=0)
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/setuptools/command/bdist_egg.py", line 153, in call_command
    self.run_command(cmdname)
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/distutils/cmd.py", line 313, in run_command
    self.distribution.run_command(command)
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/distutils/dist.py", line 985, in run_command
    cmd_obj.run()
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/setuptools/command/install_lib.py", line 11, in run
    self.build()
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/distutils/command/install_lib.py", line 107, in build
    self.run_command('build_ext')
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/distutils/cmd.py", line 313, in run_command
    self.distribution.run_command(command)
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/distutils/dist.py", line 985, in run_command
    cmd_obj.run()
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/setuptools/command/build_ext.py", line 79, in run
    _build_ext.run(self)
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/distutils/command/build_ext.py", line 340, in run
    self.build_extensions()
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/utils/cpp_extension.py", line 670, in build_extensions
    build_ext.build_extensions(self)
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/distutils/command/build_ext.py", line 449, in build_extensions
    self._build_extensions_serial()
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/distutils/command/build_ext.py", line 474, in _build_extensions_serial
    self.build_extension(ext)
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/setuptools/command/build_ext.py", line 196, in build_extension
    _build_ext.build_extension(self, ext)
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/distutils/command/build_ext.py", line 534, in build_extension
    depends=ext.depends)
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/utils/cpp_extension.py", line 500, in unix_wrap_ninja_compile
    with_cuda=with_cuda)
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/utils/cpp_extension.py", line 1255, in _write_ninja_file_and_compile_objects
    error_prefix='Error compiling objects for extension')
  File "/home/uma/miniconda3/envs/votenet/lib/python3.7/site-packages/torch/utils/cpp_extension.py", line 1555, in _run_ninja_build
    raise RuntimeError(message) from e
RuntimeError: Error compiling objects for extension

Here’s my conda list:

# packages in environment at /home/uma/miniconda3/envs/votenet:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                        main
_pytorch_select           0.1                       cpu_0
_tflow_select             2.3.0                       mkl
absl-py                   0.11.0             pyhd3eb1b0_1
astunparse                1.6.3                      py_0
blas                      1.0                         mkl
blinker                   1.4                      py37_0
brotlipy                  0.7.0           py37h27cfd23_1003
c-ares                    1.17.1               h27cfd23_0
ca-certificates           2020.12.8            h06a4308_0
cachetools                4.2.0              pyhd3eb1b0_0
certifi                   2020.12.5        py37h06a4308_0
cffi                      1.14.4           py37h261ae71_0
chardet                   3.0.4           py37h06a4308_1003
click                     7.1.2                      py_0
cryptography              3.3.1            py37h3c74f83_0
cudatoolkit               10.2.89              hfd86e86_1
freetype                  2.10.4               h5ab3b9f_0
gast                      0.3.3                      py_0
google-auth               1.21.3                     py_0
google-auth-oauthlib      0.4.2              pyhd3eb1b0_2
google-pasta              0.2.0                      py_0
grpcio                    1.31.0           py37hf8bcb03_0
h5py                      2.10.0           py37hd6299e0_1
hdf5                      1.10.6               hb1b8bf9_0
idna                      2.10                       py_0
importlib-metadata        2.0.0                      py_1
intel-openmp              2019.4                      243
jpeg                      9b                   h024ee3a_2
keras-preprocessing       1.1.0                      py_1
lcms2                     2.11                 h396b838_0
ld_impl_linux-64          2.33.1               h53a641e_7
libedit                   3.1.20191231         h14c3975_1
libffi                    3.3                  he6710b0_2
libgcc-ng                 9.1.0                hdf63c60_0
libgfortran-ng            7.3.0                hdf63c60_0
libpng                    1.6.37               hbc83047_0
libprotobuf               3.13.0.1             hd408876_0
libstdcxx-ng              9.1.0                hdf63c60_0
libtiff                   4.1.0                h2733197_1
libuv                     1.40.0               h7b6447c_0
lz4-c                     1.9.2                heb0550a_3
markdown                  3.3.3            py37h06a4308_0
mkl                       2019.4                      243
mkl-service               2.3.0            py37he8ac12f_0
mkl_fft                   1.2.0            py37h23d657b_0
mkl_random                1.1.0            py37hd6b4f25_0
ncurses                   6.2                  he6710b0_1
ninja                     1.10.2           py37hff7bd54_0
numpy                     1.19.2           py37h54aff64_0
numpy-base                1.19.2           py37hfa32c7d_0
oauthlib                  3.1.0                      py_0
olefile                   0.46                     py37_0
openssl                   1.1.1i               h27cfd23_0
opt_einsum                3.1.0                      py_0
pillow                    8.0.1            py37he98fc37_0
pip                       20.3.1           py37h06a4308_0
protobuf                  3.13.0.1         py37he6710b0_1
pyasn1                    0.4.8                      py_0
pyasn1-modules            0.2.8                      py_0
pycparser                 2.20                       py_2
pyjwt                     1.7.1                    py37_0
pyopenssl                 20.0.0             pyhd3eb1b0_1
pysocks                   1.7.1                    py37_1
python                    3.7.9                h7579374_0
pytorch                   1.7.1           py3.7_cuda10.2.89_cudnn7.6.5_0    pytorch
readline                  8.0                  h7b6447c_0
requests                  2.25.0             pyhd3eb1b0_0
requests-oauthlib         1.3.0                      py_0
rsa                       4.6                        py_0
scipy                     1.5.2            py37h0b6359f_0
setuptools                51.0.0           py37h06a4308_2
six                       1.15.0           py37h06a4308_0
sqlite                    3.33.0               h62c20be_0
tensorboard               2.3.0              pyh4dce500_0
tensorboard-plugin-wit    1.6.0                      py_0
tensorflow                2.3.0           mkl_py37h0481017_0
tensorflow-base           2.3.0           mkl_py37he9661a2_0
tensorflow-estimator      2.3.0              pyheb71bc4_0
termcolor                 1.1.0                    py37_1
tk                        8.6.10               hbc83047_0
torchvision               0.8.2                py37_cu102    pytorch
typing_extensions         3.7.4.3                    py_0
urllib3                   1.25.11                    py_0
werkzeug                  1.0.1                      py_0
wheel                     0.36.1             pyhd3eb1b0_0
wrapt                     1.12.1           py37h7b6447c_1
xz                        5.2.5                h7b6447c_0
zipp                      3.4.0              pyhd3eb1b0_0
zlib                      1.2.11               h7b6447c_3
zstd                      1.4.5                h9ceee32_0

If you have any advice, I’d really appreciate it. Please let me know if you need more information.

Issue Analytics

  • State:open
  • Created 3 years ago
  • Reactions:2
  • Comments:14

github_iconTop GitHub Comments

66reactions
adamchang2000commented, Feb 23, 2021

Found a fix:

  1. change all instances of AT_CHECK to TORCH_CHECK inside all the source files inside pointnet2/_ext_src/src and pointnet2/_ext_src/include. This is due to an API change in PyTorch.
  2. change pointnet2/setup.py:
# Copyright (c) Facebook, Inc. and its affiliates.
# 
# This source code is licensed under the MIT license found in the
# LICENSE file in the root directory of this source tree.

from setuptools import setup
from torch.utils.cpp_extension import BuildExtension, CUDAExtension
import glob
import os

_ext_src_root = "_ext_src"
_ext_sources = glob.glob("{}/src/*.cpp".format(_ext_src_root)) + glob.glob(
    "{}/src/*.cu".format(_ext_src_root)
)
_ext_headers = glob.glob("{}/include/*".format(_ext_src_root))

headers = "-I" + os.path.join(os.path.dirname(os.path.abspath(__file__)), '_ext_src', 'include')

setup(
    name='pointnet2',
    ext_modules=[
        CUDAExtension(
            name='pointnet2._ext',
            sources=_ext_sources,
            extra_compile_args={
                "cxx": ["-O2", headers],
                "nvcc": ["-O2", headers]
            },
        )
    ],
    cmdclass={
        'build_ext': BuildExtension
    }
)

The issue here is that the extra_compile_args doesn’t accept relative paths correctly (probably because the working directory changes). We need to make sure headers is an absolute path.

0reactions
reynoldscemcommented, May 4, 2022

I want to ask how to change all instances of AT_CHECK to TORCH_CHECK inside all the source files inside pointnet2/_ext_src/src and pointnet2/_ext_src/include. This is due to an API change in PyTorch?

@daxiongpro All the mentions in the extension source not the source of pytorch as a whole. Run this in your pointnet2 directiory.

grep -rl AT_CHECK | xargs sed -i 's/AT_CHECK/TORCH_CHECK/g'

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