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Kernel dies when executing to_crs
See original GitHub issueAs the title says, the kernel in a Jupyter notebook dies suddenly when executing .to_crs() function. no error message.
Conda environment freshly installed:
name: hv
channels:
- conda-forge
- defaults
dependencies:
- python=3.6.7
- bokeh=1.2.0
- holoviews=1.12.4
- geoviews=1.6.2
- panel=0.6.0
- datashader=0.7.0
- pandas=0.24.2
- tornado=6.0.2
- kafka-python
- python-avro
_libgcc_mutex 0.1 main
asn1crypto 0.24.0 py36_1003 conda-forge
attrs 19.1.0 py_0 conda-forge
backcall 0.1.0 py_0 conda-forge
bleach 3.1.0 py_0 conda-forge
bokeh 1.2.0 py36_0 conda-forge
boost-cpp 1.70.0 ha2d47e9_1 conda-forge
bzip2 1.0.8 h516909a_0 conda-forge
ca-certificates 2019.6.16 hecc5488_0 conda-forge
cairo 1.16.0 h18b612c_1001 conda-forge
cartopy 0.17.0 py36h4331854_1006 conda-forge
certifi 2019.6.16 py36_1 conda-forge
cffi 1.12.3 py36h8022711_0 conda-forge
cfitsio 3.470 hb60a0a2_2 conda-forge
cftime 1.0.3.4 py36hd352d35_1001 conda-forge
chardet 3.0.4 py36_1003 conda-forge
click 7.0 py_0 conda-forge
click-plugins 1.1.1 py_0 conda-forge
cligj 0.5.0 py_0 conda-forge
cloudpickle 1.2.1 py_0 conda-forge
colorcet 2.0.1 py_0 conda-forge
cryptography 2.7 py36h72c5cf5_0 conda-forge
curl 7.65.3 hf8cf82a_0 conda-forge
cycler 0.10.0 py_1 conda-forge
cytoolz 0.10.0 py36h516909a_0 conda-forge
dask 2.3.0 py_0 conda-forge
dask-core 2.3.0 py_0 conda-forge
datashader 0.7.0 py_0 conda-forge
datashape 0.5.4 py_1 conda-forge
dbus 1.13.6 he372182_0 conda-forge
decorator 4.4.0 py_0 conda-forge
defusedxml 0.5.0 py_1 conda-forge
distributed 2.3.2 py_1 conda-forge
entrypoints 0.3 py36_1000 conda-forge
expat 2.2.5 he1b5a44_1003 conda-forge
fiona 1.8.6 py36h5f563d9_4 conda-forge
fontconfig 2.13.1 he4413a7_1000 conda-forge
freetype 2.10.0 he983fc9_1 conda-forge
freexl 1.0.5 h14c3975_1002 conda-forge
fsspec 0.4.1 py_0 conda-forge
gdal 2.4.2 py36h0b7157c_7 conda-forge
geopandas 0.5.1 py_0 conda-forge
geos 3.7.2 he1b5a44_1 conda-forge
geotiff 1.5.1 hcd53e25_3 conda-forge
geoviews 1.6.2 py_0 conda-forge
geoviews-core 1.6.2 py_0 conda-forge
gettext 0.19.8.1 hc5be6a0_1002 conda-forge
giflib 5.1.7 h516909a_1 conda-forge
glib 2.58.3 h6f030ca_1002 conda-forge
gst-plugins-base 1.14.5 h0935bb2_0 conda-forge
gstreamer 1.14.5 h36ae1b5_0 conda-forge
hdf4 4.2.13 h9a582f1_1002 conda-forge
hdf5 1.10.4 nompi_h3c11f04_1106 conda-forge
heapdict 1.0.0 py36_1000 conda-forge
holoviews 1.12.4 py_0 conda-forge
icu 58.2 hf484d3e_1000 conda-forge
idna 2.8 py36_1000 conda-forge
imageio 2.5.0 py36_0 conda-forge
ipykernel 5.1.2 py36h5ca1d4c_0 conda-forge
ipython 7.7.0 py36h5ca1d4c_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 7.5.1 py_0 conda-forge
jedi 0.15.1 py36_0 conda-forge
jinja2 2.10.1 py_0 conda-forge
jpeg 9c h14c3975_1001 conda-forge
json-c 0.13.1 h14c3975_1001 conda-forge
jsonschema 3.0.2 py36_0 conda-forge
jupyter 1.0.0 py_2 conda-forge
jupyter_client 5.3.1 py_0 conda-forge
jupyter_console 6.0.0 py_0 conda-forge
jupyter_core 4.4.0 py_0 conda-forge
kafka-python 1.4.6 py_0 conda-forge
kealib 1.4.10 h1978553_1003 conda-forge
kiwisolver 1.1.0 py36hc9558a2_0 conda-forge
krb5 1.16.3 h05b26f9_1001 conda-forge
libblas 3.8.0 12_openblas conda-forge
libcblas 3.8.0 12_openblas conda-forge
libcurl 7.65.3 hda55be3_0 conda-forge
libdap4 3.20.2 hd48c02d_1000 conda-forge
libedit 3.1.20170329 hf8c457e_1001 conda-forge
libffi 3.2.1 he1b5a44_1006 conda-forge
libgcc-ng 9.1.0 hdf63c60_0
libgdal 2.4.2 h182c168_7 conda-forge
libgfortran-ng 7.3.0 hdf63c60_0
libiconv 1.15 h516909a_1005 conda-forge
libkml 1.3.0 h4fcabce_1010 conda-forge
liblapack 3.8.0 12_openblas conda-forge
libnetcdf 4.6.2 hbdf4f91_1001 conda-forge
libopenblas 0.3.7 h6e990d7_1 conda-forge
libpng 1.6.37 hed695b0_0 conda-forge
libpq 11.5 hd9ab2ff_1 conda-forge
libsodium 1.0.17 h516909a_0 conda-forge
libspatialindex 1.9.0 he1b5a44_1 conda-forge
libspatialite 4.3.0a h57ae47a_1030 conda-forge
libssh2 1.8.2 h22169c7_2 conda-forge
libstdcxx-ng 9.1.0 hdf63c60_0
libtiff 4.0.10 h57b8799_1003 conda-forge
libuuid 2.32.1 h14c3975_1000 conda-forge
libxcb 1.13 h14c3975_1002 conda-forge
libxml2 2.9.9 h13577e0_2 conda-forge
llvmlite 0.29.0 py36hfd453ef_1 conda-forge
locket 0.2.0 py_2 conda-forge
lz4-c 1.8.3 he1b5a44_1001 conda-forge
markdown 3.1.1 py_0 conda-forge
markupsafe 1.1.1 py36h14c3975_0 conda-forge
matplotlib 3.1.1 py36_0 conda-forge
matplotlib-base 3.1.1 py36hfd891ef_0 conda-forge
mistune 0.8.4 py36h14c3975_1000 conda-forge
msgpack-python 0.6.1 py36h6bb024c_0 conda-forge
multipledispatch 0.6.0 py_0 conda-forge
munch 2.3.2 py_0 conda-forge
nbconvert 5.6.0 py_0 conda-forge
nbformat 4.4.0 py_1 conda-forge
ncurses 6.1 hf484d3e_1002 conda-forge
netcdf4 1.5.1.2 py36had58050_0 conda-forge
networkx 2.3 py_0 conda-forge
notebook 6.0.1 py36_0 conda-forge
numba 0.45.1 py36hb3f55d8_0 conda-forge
numpy 1.17.0 py36h95a1406_0 conda-forge
olefile 0.46 py_0 conda-forge
openjpeg 2.3.1 h58a6597_0 conda-forge
openssl 1.1.1c h516909a_0 conda-forge
owslib 0.18.0 py_0 conda-forge
packaging 19.0 py_0 conda-forge
pandas 0.24.2 py36hb3f55d8_0 conda-forge
pandoc 2.7.3 0 conda-forge
pandocfilters 1.4.2 py_1 conda-forge
panel 0.6.0 1 conda-forge
param 1.9.1 py_0 conda-forge
parso 0.5.1 py_0 conda-forge
partd 1.0.0 py_0 conda-forge
pcre 8.41 hf484d3e_1003 conda-forge
pexpect 4.7.0 py36_0 conda-forge
pickleshare 0.7.5 py36_1000 conda-forge
pillow 6.1.0 py36h6b7be26_1 conda-forge
pip 19.2.3 py36_0 conda-forge
pixman 0.38.0 h516909a_1003 conda-forge
poppler 0.67.0 ha967d66_7 conda-forge
poppler-data 0.4.9 1 conda-forge
postgresql 11.5 hc63931a_1 conda-forge
proj4 6.1.1 hc80f0dc_1 conda-forge
prometheus_client 0.7.1 py_0 conda-forge
prompt_toolkit 2.0.9 py_0 conda-forge
psutil 5.6.3 py36h516909a_0 conda-forge
pthread-stubs 0.4 h14c3975_1001 conda-forge
ptyprocess 0.6.0 py_1001 conda-forge
pycparser 2.19 py36_1 conda-forge
pyct 0.4.6 py_0 conda-forge
pyct-core 0.4.6 py_0 conda-forge
pyepsg 0.4.0 py_0 conda-forge
pygments 2.4.2 py_0 conda-forge
pykdtree 1.3.1 py36h3010b51_1002 conda-forge
pyopenssl 19.0.0 py36_0 conda-forge
pyparsing 2.4.2 py_0 conda-forge
pyproj 2.3.0 py36h2fd02e8_0 conda-forge
pyqt 5.9.2 py36hcca6a23_2 conda-forge
pyrsistent 0.15.4 py36h516909a_0 conda-forge
pyshp 2.1.0 py_0 conda-forge
pysocks 1.7.0 py36_0 conda-forge
python 3.6.7 h357f687_1005 conda-forge
python-avro 1.8.2 py36_1000 conda-forge
python-dateutil 2.8.0 py_0 conda-forge
pytz 2019.2 py_0 conda-forge
pyviz_comms 0.7.2 py_0 conda-forge
pywavelets 1.0.3 py36hd352d35_1 conda-forge
pyyaml 5.1.2 py36h516909a_0 conda-forge
pyzmq 18.0.2 py36h1768529_2 conda-forge
qt 5.9.7 h52cfd70_2 conda-forge
qtconsole 4.5.4 py_0 conda-forge
readline 8.0 hf8c457e_0 conda-forge
requests 2.22.0 py36_1 conda-forge
rtree 0.8.3 py36h666c49c_1002 conda-forge
scikit-image 0.15.0 py36hb3f55d8_2 conda-forge
scipy 1.3.1 py36h921218d_2 conda-forge
send2trash 1.5.0 py_0 conda-forge
setuptools 41.2.0 py36_0 conda-forge
shapely 1.6.4 py36hec07ddf_1006 conda-forge
sip 4.19.8 py36hf484d3e_1000 conda-forge
six 1.12.0 py36_1000 conda-forge
sortedcontainers 2.1.0 py_0 conda-forge
sqlite 3.29.0 hcee41ef_0 conda-forge
tblib 1.4.0 py_0 conda-forge
terminado 0.8.2 py36_0 conda-forge
testpath 0.4.2 py_1001 conda-forge
tk 8.6.9 hed695b0_1002 conda-forge
toolz 0.10.0 py_0 conda-forge
tornado 6.0.2 py36h516909a_0 conda-forge
traitlets 4.3.2 py36_1000 conda-forge
tzcode 2019a h516909a_1002 conda-forge
urllib3 1.25.3 py36_0 conda-forge
wcwidth 0.1.7 py_1 conda-forge
webencodings 0.5.1 py_1 conda-forge
wheel 0.33.6 py36_0 conda-forge
widgetsnbextension 3.5.1 py36_0 conda-forge
xarray 0.12.3 py_0 conda-forge
xerces-c 3.2.2 hea5cb30_1003 conda-forge
xorg-kbproto 1.0.7 h14c3975_1002 conda-forge
xorg-libice 1.0.10 h516909a_0 conda-forge
xorg-libsm 1.2.3 h84519dc_1000 conda-forge
xorg-libx11 1.6.8 h516909a_0 conda-forge
xorg-libxau 1.0.9 h14c3975_0 conda-forge
xorg-libxdmcp 1.1.3 h516909a_0 conda-forge
xorg-libxext 1.3.4 h516909a_0 conda-forge
xorg-libxrender 0.9.10 h516909a_1002 conda-forge
xorg-renderproto 0.11.1 h14c3975_1002 conda-forge
xorg-xextproto 7.3.0 h14c3975_1002 conda-forge
xorg-xproto 7.0.31 h14c3975_1007 conda-forge
xz 5.2.4 h14c3975_1001 conda-forge
yaml 0.1.7 h14c3975_1001 conda-forge
zeromq 4.3.2 he1b5a44_2 conda-forge
zict 1.0.0 py_0 conda-forge
zlib 1.2.11 h516909a_1005 conda-forge
zstd 1.4.0 h3b9ef0a_0 conda-forge
Issue Analytics
- State:
- Created 4 years ago
- Comments:8 (5 by maintainers)
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I think it will be fixed in pyproj 2.3.1 with this fix 🤞 https://github.com/pyproj4/pyproj/pull/419
EDIT: Wrong link. FIxed ^^
Super, thanks for checking! Closing this issue then.