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Problem getting geopandas to work with jupyter notebook

See original GitHub issue

Using Anaconda3(64 bit) installed within the last month on a Windows 10 machine, I am having trouble getting jupyter notebook to recognize that geopandas is available. Steps:

  1. Start Anaconda Navigator
  2. Create a new environment
  3. Open the environment in terminal
  4. use instructions from installation page: conda create -n geo_env conda activate geo_env conda config --env --add channels conda-forge conda config --env --set channel_priority strict conda install python=3 geopandas

If i do just this, start python, and import geopandas, it seems to work. image However, if I exit python and install jupyter: conda install python=3 jupyter and start a new jupyter notebook in that environment, I get: image

When I list the packages in the environment, I see that jupyter and geopandas should be available:

(geo_env) C:\Users\bob>conda list
 packages in environment at C:\Users\bob\Anaconda3\envs\geo_env:
 Name                    Version                   Build  Channel
attrs                     19.3.0                     py_0    conda-forge
backcall                  0.1.0                      py_0    conda-forge
bleach                    3.1.0                      py_0    conda-forge
boost-cpp                 1.70.0               h6a4c333_2    conda-forge
bzip2                     1.0.8                hfa6e2cd_1    conda-forge
ca-certificates           2019.9.11            hecc5488_0    conda-forge
certifi                   2019.6.16                py37_1    conda-forge
cfitsio                   3.470                hfa6e2cd_2    conda-forge
click                     7.0                        py_0    conda-forge
click-plugins             1.1.1                      py_0    conda-forge
cligj                     0.5.0                      py_0    conda-forge
colorama                  0.4.1                      py_0    conda-forge
curl                      7.65.3               h4496350_0    conda-forge
decorator                 4.4.0                      py_0    conda-forge
defusedxml                0.6.0                      py_0    conda-forge
entrypoints               0.3                   py37_1000    conda-forge
expat                     2.2.5             habb2df7_1003    conda-forge
fiona                     1.8.7            py37h3234bc7_0    conda-forge
freetype                  2.10.0               h563cfd7_1    conda-forge
freexl                    1.0.5             hd288d7e_1002    conda-forge
gdal                      2.4.2            py37he6b6c38_4    conda-forge
**geopandas                 0.6.1                      py_0    conda-forge**
geos                      3.7.2                he025d50_2    conda-forge
geotiff                   1.5.1                h8f84788_2    conda-forge
gettext                   0.19.8.1          hb01d8f6_1002    conda-forge
glib                      2.58.3            hc0c2ac7_1002    conda-forge
hdf4                      4.2.13            hf8e6fe8_1002    conda-forge
hdf5                      1.10.5          nompi_ha405e13_1103    conda-forge
icu                       64.2                 he025d50_1    conda-forge
importlib_metadata        0.23                     py37_0    conda-forge
intel-openmp              2019.4                      245
ipykernel                 5.1.2            py37h5ca1d4c_0    conda-forge
ipython                   7.8.0            py37h5ca1d4c_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
ipywidgets                7.5.1                      py_0    conda-forge
jedi                      0.15.1                   py37_0    conda-forge
jinja2                    2.10.3                     py_0    conda-forge
jpeg                      9c                hfa6e2cd_1001    conda-forge
jsonschema                3.1.1                    py37_0    conda-forge
**jupyter                   1.0.0                      py_2    conda-forge
jupyter_client            5.3.3                    py37_1    conda-forge
jupyter_console           6.0.0                      py_0    conda-forge
jupyter_core              4.5.0                      py_0    conda-forge**
kealib                    1.4.10            hf7dc31f_1005    conda-forge
krb5                      1.16.3            hdd46e55_1001    conda-forge
libblas                   3.8.0                    14_mkl    conda-forge
libcblas                  3.8.0                    14_mkl    conda-forge
libclang                  9.0.0                h74a9793_1    conda-forge
libcurl                   7.65.3               h4496350_0    conda-forge
libffi                    3.2.1             h6538335_1006    conda-forge
libgdal                   2.4.2                h2bdb96c_4    conda-forge
libiconv                  1.15              hfa6e2cd_1005    conda-forge
libkml                    1.3.0             h4ece8bf_1010    conda-forge
liblapack                 3.8.0                    14_mkl    conda-forge
libnetcdf                 4.6.2             h376842a_1003    conda-forge
libpng                    1.6.37               h7602738_0    conda-forge
libpq                     11.5                 hb0bdaea_1    conda-forge
libsodium                 1.0.17               h2fa13f4_0    conda-forge
libspatialindex           1.8.5                he025d50_4    conda-forge
libspatialite             4.3.0a            h832c139_1029    conda-forge
libssh2                   1.8.2                h642c060_2    conda-forge
libtiff                   4.0.10            h6512ee2_1003    conda-forge
libxml2                   2.9.9                h9ce36c8_5    conda-forge
lz4-c                     1.8.3             he025d50_1001    conda-forge
m2w64-expat               2.1.1                         2
m2w64-gcc-libgfortran     5.3.0                         6
m2w64-gcc-libs            5.3.0                         7
m2w64-gcc-libs-core       5.3.0                         7
m2w64-gettext             0.19.7                        2
m2w64-gmp                 6.1.0                         2
m2w64-libiconv            1.14                          6
m2w64-libwinpthread-git   5.0.0.4634.697f757               2
m2w64-xz                  5.2.2                         2
markupsafe                1.1.1            py37hfa6e2cd_0    conda-forge
mistune                   0.8.4           py37hfa6e2cd_1000    conda-forge
mkl                       2019.4                      245
more-itertools            7.2.0                      py_0    conda-forge
msys2-conda-epoch         20160418                      1
munch                     2.3.2                      py_0    conda-forge
nbconvert                 5.6.0                    py37_1    conda-forge
nbformat                  4.4.0                      py_1    conda-forge
notebook                  6.0.1                    py37_0    conda-forge
numpy                     1.17.1           py37hc71023c_0    conda-forge
openjpeg                  2.3.1                hb24c2e3_1    conda-forge
openssl                   1.1.1c               hfa6e2cd_0    conda-forge
pandas                    0.25.1           py37he350917_0    conda-forge
pandoc                    2.7.3                         0    conda-forge
pandocfilters             1.4.2                      py_1    conda-forge
parso                     0.5.1                      py_0    conda-forge
pcre                      8.43                 h6538335_0    conda-forge
pickleshare               0.7.5                 py37_1000    conda-forge
pip                       19.3                     py37_0    conda-forge
poppler                   0.67.0               h92819f6_7    conda-forge
poppler-data              0.4.9                         1    conda-forge
postgresql                11.5                 h06f7779_1    conda-forge
proj4                     6.1.0                hc2d0af5_2    conda-forge
prometheus_client         0.7.1                      py_0    conda-forge
prompt_toolkit            2.0.10                     py_0    conda-forge
pygments                  2.4.2                      py_0    conda-forge
pyproj                    2.2.1            py37h3f740ce_0    conda-forge
pyqt                      5.12.3           py37h6538335_0    conda-forge
pyqt5-sip                 4.19.18                  pypi_0    pypi
pyqtwebengine             5.12.1                   pypi_0    pypi
pyrsistent                0.15.4           py37hfa6e2cd_0    conda-forge
python                    3.7.3                h510b542_1    conda-forge
python-dateutil           2.8.0                      py_0    conda-forge
pytz                      2019.3                     py_0    conda-forge
pywin32                   224             py37hfa6e2cd_1000    conda-forge
pywinpty                  0.5.5                 py37_1000    conda-forge
pyzmq                     18.1.0           py37h16f9016_0    conda-forge
qt                        5.12.5               h7ef1ec2_0    conda-forge
qtconsole                 4.5.5                      py_0    conda-forge
rtree                     0.8.3           py37h21ff451_1002    conda-forge
send2trash                1.5.0                      py_0    conda-forge
setuptools                41.4.0                   py37_0    conda-forge
shapely                   1.6.4           py37ha35856d_1006    conda-forge
six                       1.12.0                py37_1000    conda-forge
sqlite                    3.30.1               hfa6e2cd_0    conda-forge
terminado                 0.8.2                    py37_0    conda-forge
testpath                  0.4.2                   py_1001    conda-forge
tk                        8.6.9             hfa6e2cd_1003    conda-forge
tornado                   6.0.3            py37hfa6e2cd_0    conda-forge
traitlets                 4.3.3                    py37_0    conda-forge
vc                        14.1                 h0510ff6_4
vs2015_runtime            14.16.27012          hf0eaf9b_0
wcwidth                   0.1.7                      py_1    conda-forge
webencodings              0.5.1                      py_1    conda-forge
wheel                     0.33.6                   py37_0    conda-forge
widgetsnbextension        3.5.1                    py37_0    conda-forge
wincertstore              0.2                   py37_1002    conda-forge
winpty                    0.4.3                         4    conda-forge
xerces-c                  3.2.2             h6538335_1004    conda-forge
xz                        5.2.4             h2fa13f4_1001    conda-forge
zeromq                    4.3.2                h6538335_2    conda-forge
zipp                      0.6.0                      py_0    conda-forge
zlib                      1.2.11            h2fa13f4_1006    conda-forge
zstd                      1.4.0                hd8a0e53_0    conda-forge

(geo_env) C:\Users\bob>

Issue Analytics

  • State:closed
  • Created 4 years ago
  • Comments:11 (3 by maintainers)

github_iconTop GitHub Comments

8reactions
MariFontenelecommented, Nov 11, 2020

After many hours and none of the solutions working, even this one above, I found this tutorial:

https://www.youtube.com/watch?v=LNPETGKAe0c

I’m posting here so you guys don’t lose as much time of life as I did in this problem

6reactions
martinfleiscommented, Oct 16, 2019

Try installing your geo_env kernel to Jupyter:

conda activate geo_env
python -m ipykernel install --user --name geo_env

Then you should be able to switch to it in jypyter notebook. I will close this issue as it is not issue of geopandas apparently. We can continue discussion even in closed issue.

Read more comments on GitHub >

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