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ValueError: Unknown column geometry
See original GitHub issueI am getting the following exception on mac os 10.14.5 despite my condarc has strict mode.
Error:
Error : Traceback (most recent call last):
File "/Users/Naresh/anaconda3/envs/dev/lib/python3.6/site-packages/pandas/core/indexes/base.py", line 2897, in get_loc
return self._engine.get_loc(key)
File "pandas/_libs/index.pyx", line 107, in pandas._libs.index.IndexEngine.get_loc
File "pandas/_libs/index.pyx", line 131, in pandas._libs.index.IndexEngine.get_loc
File "pandas/_libs/hashtable_class_helper.pxi", line 1607, in pandas._libs.hashtable.PyObjectHashTable.get_item
File "pandas/_libs/hashtable_class_helper.pxi", line 1614, in pandas._libs.hashtable.PyObjectHashTable.get_item
KeyError: 'geometry'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/Users/Naresh/anaconda3/envs/dev/lib/python3.6/site-packages/geopandas/geodataframe.py", line 155, in set_geometry
level = frame[col].values
File "/Users/Naresh/anaconda3/envs/dev/lib/python3.6/site-packages/geopandas/geodataframe.py", line 546, in __getitem__
result = super(GeoDataFrame, self).__getitem__(key)
File "/Users/Naresh/anaconda3/envs/dev/lib/python3.6/site-packages/pandas/core/frame.py", line 2980, in __getitem__
indexer = self.columns.get_loc(key)
File "/Users/Naresh/anaconda3/envs/dev/lib/python3.6/site-packages/pandas/core/indexes/base.py", line 2899, in get_loc
return self._engine.get_loc(self._maybe_cast_indexer(key))
File "pandas/_libs/index.pyx", line 107, in pandas._libs.index.IndexEngine.get_loc
File "pandas/_libs/index.pyx", line 131, in pandas._libs.index.IndexEngine.get_loc
File "pandas/_libs/hashtable_class_helper.pxi", line 1607, in pandas._libs.hashtable.PyObjectHashTable.get_item
File "pandas/_libs/hashtable_class_helper.pxi", line 1614, in pandas._libs.hashtable.PyObjectHashTable.get_item
KeyError: 'geometry'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "ImageCoregister.py", line 18, in <module>
a = CRL.correct_shifts()
File "/Users/Naresh/anaconda3/envs/dev/lib/python3.6/site-packages/arosics/CoReg_local.py", line 603, in correct_shifts
coreg_info = self.coreg_info
File "/Users/Naresh/anaconda3/envs/dev/lib/python3.6/site-packages/arosics/CoReg_local.py", line 575, in coreg_info
'GCPList': self.tiepoint_grid.GCPList,
File "/Users/Naresh/anaconda3/envs/dev/lib/python3.6/site-packages/arosics/CoReg_local.py", line 333, in tiepoint_grid
self._tiepoint_grid.get_CoRegPoints_table()
File "/Users/Naresh/anaconda3/envs/dev/lib/python3.6/site-packages/arosics/Tie_Point_Grid.py", line 402, in get_CoRegPoints_table
GDF = GDF.astype(np.object).merge(records.astype(np.object), on='POINT_ID', how="inner")
File "/Users/Naresh/anaconda3/envs/dev/lib/python3.6/site-packages/geopandas/geodataframe.py", line 711, in astype
df = geopandas.GeoDataFrame(df, geometry=self._geometry_column_name)
File "/Users/Naresh/anaconda3/envs/dev/lib/python3.6/site-packages/geopandas/geodataframe.py", line 83, in __init__
self.set_geometry(geometry, inplace=True)
File "/Users/Naresh/anaconda3/envs/dev/lib/python3.6/site-packages/geopandas/geodataframe.py", line 157, in set_geometry
raise ValueError("Unknown column %s" % col)
ValueError: Unknown column geometry
conda list
affine 2.3.0 py_0 conda-forge
arosics 0.9.2 pypi_0 pypi
asciitree 0.3.3 py_2 conda-forge
asn1crypto 1.0.0 py36_0 conda-forge
attrs 19.2.0 py_0 conda-forge
basemap 1.2.1 py36hd103db2_1 conda-forge
bokeh 1.3.4 py36_0 conda-forge
boost-cpp 1.70.0 hd59e818_1 conda-forge
branca 0.3.1 pypi_0 pypi
bzip2 1.0.8 h01d97ff_1 conda-forge
ca-certificates 2019.9.11 hecc5488_0 conda-forge
cairo 1.16.0 h0ab9d94_1001 conda-forge
certifi 2019.6.16 py36_1 conda-forge
cffi 1.12.3 py36hccf1714_0 conda-forge
cfitsio 3.470 h389770f_2 conda-forge
chardet 3.0.4 py36_1003 conda-forge
click 7.0 py_0 conda-forge
click-plugins 1.1.1 py_0 conda-forge
cligj 0.5.0 py_0 conda-forge
cloudpickle 1.2.2 py_0 conda-forge
cmocean 2.0 py_1 conda-forge
colorspacious 1.1.2 pyh24bf2e0_0 conda-forge
configobj 5.0.6 py_0 conda-forge
cryptography 2.7 py36h212c5bf_0 conda-forge
curl 7.65.3 h22ea746_0 conda-forge
cycler 0.10.0 py_1 conda-forge
cytoolz 0.10.0 py36h01d97ff_0 conda-forge
dask 2.5.0 py_0 conda-forge
dask-core 2.5.0 py_0 conda-forge
decorator 4.4.0 py_0 conda-forge
dill 0.3.1.1 pypi_0 pypi
distributed 2.5.1 py_0 conda-forge
earthpy 0.7.4 py_0 conda-forge
expat 2.2.5 h6de7cb9_1003 conda-forge
fasteners 0.14.1 py_3 conda-forge
fiona 1.8.6 py36h7eb7563_3 conda-forge
folium 0.10.0 pypi_0 pypi
fontconfig 2.13.1 h1027ab8_1000 conda-forge
freetype 2.10.0 h24853df_1 conda-forge
freexl 1.0.5 h1de35cc_1002 conda-forge
fsspec 0.5.1 py_0 conda-forge
gdal 2.4.1 py36h39889d8_10 conda-forge
geoarray 0.8.22 pypi_0 pypi
geojson 2.5.0 pypi_0 pypi
geopandas 0.6.0 py_0 conda-forge
geos 3.7.2 h6de7cb9_2 conda-forge
geotiff 1.4.3 h113155d_1001 conda-forge
gettext 0.19.8.1 h46ab8bc_1002 conda-forge
giflib 5.1.7 h01d97ff_1 conda-forge
glib 2.58.3 h9d45998_1002 conda-forge
hdf4 4.2.13 hf3c6af0_1002 conda-forge
hdf5 1.10.4 nompi_h0cbb7df_1106 conda-forge
heapdict 1.0.1 py_0 conda-forge
icu 58.2 h0a44026_1000 conda-forge
idna 2.8 py36_1000 conda-forge
imageio 2.5.0 py36_0 conda-forge
jinja2 2.10.1 py_0 conda-forge
jpeg 9c h1de35cc_1001 conda-forge
json-c 0.13.1 h1de35cc_1001 conda-forge
kealib 1.4.10 hecf890f_1003 conda-forge
kiwisolver 1.1.0 py36h770b8ee_0 conda-forge
krb5 1.16.3 hcfa6398_1001 conda-forge
libblas 3.8.0 13_openblas conda-forge
libcblas 3.8.0 13_openblas conda-forge
libcurl 7.65.3 h16faf7d_0 conda-forge
libcxx 9.0.0 0 conda-forge
libcxxabi 9.0.0 0 conda-forge
libdap4 3.20.4 habf5908_0 conda-forge
libedit 3.1.20170329 hcfe32e1_1001 conda-forge
libffi 3.2.1 h6de7cb9_1006 conda-forge
libgdal 2.4.1 hc4192b8_10 conda-forge
libgfortran 3.0.1 0 conda-forge
libiconv 1.15 h01d97ff_1005 conda-forge
libkml 1.3.0 hed7d534_1010 conda-forge
liblapack 3.8.0 13_openblas conda-forge
libnetcdf 4.6.2 h6b88ef6_1001 conda-forge
libopenblas 0.3.7 hd44dcd8_1 conda-forge
libpng 1.6.37 h2573ce8_0 conda-forge
libpq 11.5 h756f0eb_1 conda-forge
libspatialindex 1.9.0 h6de7cb9_1 conda-forge
libspatialite 4.3.0a hb3e03d6_1030 conda-forge
libssh2 1.8.2 hcdc9a53_2 conda-forge
libtiff 4.0.10 hd08fb8f_1003 conda-forge
libxml2 2.9.9 hd80cff7_2 conda-forge
locket 0.2.0 py_2 conda-forge
lz4-c 1.8.3 h6de7cb9_1001 conda-forge
markupsafe 1.1.1 py36h1de35cc_0 conda-forge
matplotlib 3.1.1 py36_1 conda-forge
matplotlib-base 3.1.1 py36h3a684a6_1 conda-forge
monotonic 1.5 py_0 conda-forge
mpld3 0.3 pypi_0 pypi
msgpack-python 0.6.2 py36h770b8ee_0 conda-forge
munch 2.3.2 py_0 conda-forge
ncurses 6.1 h0a44026_1002 conda-forge
networkx 2.3 py_0 conda-forge
numcodecs 0.6.3 py36h0a44026_0 conda-forge
numpy 1.17.2 py36h6b0580a_0 conda-forge
olefile 0.46 py_0 conda-forge
openjpeg 2.3.1 hdc36067_1 conda-forge
openssl 1.1.1c h01d97ff_0 conda-forge
packaging 19.2 py_0 conda-forge
pandas 0.25.1 py36h86efe34_0 conda-forge
partd 1.0.0 py_0 conda-forge
pcre 8.41 h0a44026_1003 conda-forge
pillow 6.2.0 py36hb6f49c9_0 conda-forge
pip 19.2.3 py36_0 conda-forge
pixman 0.38.0 h01d97ff_1003 conda-forge
plotly 4.1.1 pypi_0 pypi
poppler 0.67.0 hd5eb092_7 conda-forge
poppler-data 0.4.9 1 conda-forge
postgresql 11.5 h25afefd_1 conda-forge
proj4 5.2.0 h6de7cb9_1006 conda-forge
psutil 5.6.3 py36h01d97ff_0 conda-forge
py-tools-ds 0.14.21 pypi_0 pypi
pycparser 2.19 py36_1 conda-forge
pyfftw 0.11.1 py36h917ab60_1001 conda-forge
pykdtree 1.3.1 py36h917ab60_1002 conda-forge
pykrige 1.4.0 py36h1d22016_1001 conda-forge
pyopenssl 19.0.0 py36_0 conda-forge
pyparsing 2.4.2 py_0 conda-forge
pyproj 1.9.6 py36h01d97ff_1002 conda-forge
pyresample 1.13.1 py36h86efe34_0 conda-forge
pyshp 2.1.0 py_0 conda-forge
pysocks 1.7.1 py36_0 conda-forge
python 3.6.7 h94afb7f_1005 conda-forge
python-dateutil 2.8.0 py_0 conda-forge
pytz 2019.2 py_0 conda-forge
pywavelets 1.0.3 py36h1e5eb4f_1 conda-forge
pyyaml 5.1.2 py36h01d97ff_0 conda-forge
rasterio 1.0.25 py36h238e834_0 conda-forge
readline 8.0 hcfe32e1_0 conda-forge
requests 2.22.0 py36_1 conda-forge
retrying 1.3.3 pypi_0 pypi
rtree 0.8.3 py36h666c49c_1002 conda-forge
scikit-image 0.15.0 py36h86efe34_2 conda-forge
scipy 1.3.1 py36hab3da7d_2 conda-forge
setuptools 41.2.0 py36_0 conda-forge
shapely 1.6.4 py36h0567c5e_1006 conda-forge
six 1.12.0 py36_1000 conda-forge
snuggs 1.4.7 py_0 conda-forge
sortedcontainers 2.1.0 py_0 conda-forge
spectral 0.19 pypi_0 pypi
sqlite 3.29.0 hb7d70f7_1 conda-forge
tblib 1.4.0 py_0 conda-forge
tk 8.6.9 h2573ce8_1003 conda-forge
toolz 0.10.0 py_0 conda-forge
tornado 6.0.3 py36h01d97ff_0 conda-forge
tzcode 2019a h01d97ff_1002 conda-forge
urllib3 1.25.6 py36_0 conda-forge
utm 0.5.0 pypi_0 pypi
viscm 0.7 pyh24bf2e0_0 conda-forge
wheel 0.33.6 py36_0 conda-forge
xerces-c 3.2.2 h4db8090_1003 conda-forge
xz 5.2.4 h1de35cc_1001 conda-forge
yaml 0.1.7 h1de35cc_1001 conda-forge
zarr 2.3.2 py36_0 conda-forge
zict 1.0.0 py_0 conda-forge
zlib 1.2.11 h01d97ff_1006 conda-forge
zstd 1.4.0 ha9f0a20_0 conda-forge
condarc
auto_activate_base: false
ssl_verify: true
channels:
- conda-forge
- defaults
channel_priority: strict
conda info :
active environment : dev
active env location : /Users/Naresh/anaconda3/envs/dev
shell level : 1
user config file : /Users/Naresh/.condarc
populated config files : /Users/Naresh/.condarc
conda version : 4.7.12
conda-build version : 3.18.8
python version : 3.7.3.final.0
virtual packages :
base environment : /Users/Naresh/anaconda3 (writable)
channel URLs : https://conda.anaconda.org/conda-forge/osx-64
https://conda.anaconda.org/conda-forge/noarch
https://repo.anaconda.com/pkgs/main/osx-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/osx-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /Users/Naresh/anaconda3/pkgs
/Users/Naresh/.conda/pkgs
envs directories : /Users/Naresh/anaconda3/envs
/Users/Naresh/.conda/envs
platform : osx-64
user-agent : conda/4.7.12 requests/2.22.0 CPython/3.7.3 Darwin/18.6.0 OSX/10.14.5
UID:GID : 501:20
netrc file : /Users/Naresh/.netrc
offline mode : False
Issue Analytics
- State:
- Created 4 years ago
- Comments:10 (7 by maintainers)
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This is fixed in version 0.9.3 of AROSICS.
@brendan-ward this issue is now fixed on master, but I opened https://github.com/geopandas/geopandas/issues/1153 with your description of the
.locissue