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h5py install fails on M1
See original GitHub issueBackground info:
$ uname -a
Darwin MacBook-Pro.local 20.5.0 Darwin Kernel Version 20.5.0: Sat May 8 05:10:31 PDT 2021; root:xnu-7195.121.3~9/RELEASE_ARM64_T8101 arm64
$ python3.9 --version # acquired from system
Python 3.9.6
$ brew install hdf5
Warning: hdf5 1.12.1 is already installed and up-to-date.
To reproduce:
$ python3.9 -m venv .
$ . bin/activate
$ cat requirement.txt
numpy >= 1.21.0
h5py >= 3.3.0
$ pip3 install -r requirements.txt
Collecting numpy>=1.21.0
Using cached numpy-1.21.1-cp39-cp39-macosx_11_0_arm64.whl (12.4 MB)
Collecting h5py>=3.3.0
Using cached h5py-3.3.0.tar.gz (380 kB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Installing backend dependencies ... error
ERROR: Command errored out with exit status 1:
command: /Users/nathompson7/reproduce/bin/python3.9 /private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-standalone-pip-fnjm6ps0/__env_pip__.zip/pip install --ignore-installed --no-user --prefix /private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-build-env-1upvtdul/normal --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- 'Cython>=0.29.15; python_version >= "3.9"' 'numpy==1.14.5; python_version == "3.7"' 'numpy==1.19.3; python_version >= "3.9"' pkgconfig 'numpy==1.17.5; python_version == "3.8"' 'Cython>=0.29.14; python_version == "3.8"' 'Cython>=0.29; python_version < "3.8"'
cwd: None
Complete output (900 lines):
Ignoring numpy: markers 'python_version == "3.7"' don't match your environment
Ignoring numpy: markers 'python_version == "3.8"' don't match your environment
Ignoring Cython: markers 'python_version == "3.8"' don't match your environment
Ignoring Cython: markers 'python_version < "3.8"' don't match your environment
Collecting Cython>=0.29.15
Using cached Cython-0.29.24-py2.py3-none-any.whl (979 kB)
Collecting numpy==1.19.3
Using cached numpy-1.19.3.zip (7.3 MB)
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing wheel metadata: started
Preparing wheel metadata: finished with status 'done'
Collecting pkgconfig
Using cached pkgconfig-1.5.5-py3-none-any.whl (6.7 kB)
Building wheels for collected packages: numpy
Building wheel for numpy (PEP 517): started
Building wheel for numpy (PEP 517): finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /Users/nathompson7/reproduce/bin/python3.9 /var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/tmpb5bfymas_in_process.py build_wheel /var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/tmp47b0th2i
cwd: /private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-install-rt8dwclw/numpy_99fc1db8e0b64d64a094cdbef9fa6a63
Complete output (873 lines):
Running from numpy source directory.
numpy/random/_bounded_integers.pxd.in has not changed
numpy/random/_philox.pyx has not changed
numpy/random/_bounded_integers.pyx.in has not changed
numpy/random/_sfc64.pyx has not changed
numpy/random/_mt19937.pyx has not changed
numpy/random/bit_generator.pyx has not changed
Processing numpy/random/_bounded_integers.pyx
numpy/random/mtrand.pyx has not changed
numpy/random/_generator.pyx has not changed
numpy/random/_pcg64.pyx has not changed
numpy/random/_common.pyx has not changed
Cythonizing sources
blas_opt_info:
blas_mkl_info:
customize UnixCCompiler
libraries mkl_rt not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
NOT AVAILABLE
blis_info:
libraries blis not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
NOT AVAILABLE
openblas_info:
libraries openblas not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
NOT AVAILABLE
atlas_3_10_blas_threads_info:
Setting PTATLAS=ATLAS
libraries tatlas not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
NOT AVAILABLE
atlas_3_10_blas_info:
libraries satlas not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
NOT AVAILABLE
atlas_blas_info:
libraries f77blas,cblas,atlas not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
NOT AVAILABLE
accelerate_info:
libraries accelerate not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
Library accelerate was not found. Ignoring
libraries veclib not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
Library veclib was not found. Ignoring
FOUND:
extra_compile_args = ['-faltivec', '-I/System/Library/Frameworks/vecLib.framework/Headers']
extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]
FOUND:
extra_compile_args = ['-faltivec', '-I/System/Library/Frameworks/vecLib.framework/Headers']
extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]
non-existing path in 'numpy/distutils': 'site.cfg'
lapack_opt_info:
lapack_mkl_info:
libraries mkl_rt not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
NOT AVAILABLE
openblas_lapack_info:
libraries openblas not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
NOT AVAILABLE
openblas_clapack_info:
libraries openblas,lapack not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
NOT AVAILABLE
flame_info:
libraries flame not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
NOT AVAILABLE
atlas_3_10_threads_info:
Setting PTATLAS=ATLAS
libraries lapack_atlas not found in /Users/nathompson7/reproduce/lib
libraries tatlas,tatlas not found in /Users/nathompson7/reproduce/lib
libraries lapack_atlas not found in /usr/lib
libraries tatlas,tatlas not found in /usr/lib
<class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
NOT AVAILABLE
atlas_3_10_info:
libraries lapack_atlas not found in /Users/nathompson7/reproduce/lib
libraries satlas,satlas not found in /Users/nathompson7/reproduce/lib
libraries lapack_atlas not found in /usr/lib
libraries satlas,satlas not found in /usr/lib
<class 'numpy.distutils.system_info.atlas_3_10_info'>
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries lapack_atlas not found in /Users/nathompson7/reproduce/lib
libraries ptf77blas,ptcblas,atlas not found in /Users/nathompson7/reproduce/lib
libraries lapack_atlas not found in /usr/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
<class 'numpy.distutils.system_info.atlas_threads_info'>
NOT AVAILABLE
atlas_info:
libraries lapack_atlas not found in /Users/nathompson7/reproduce/lib
libraries f77blas,cblas,atlas not found in /Users/nathompson7/reproduce/lib
libraries lapack_atlas not found in /usr/lib
libraries f77blas,cblas,atlas not found in /usr/lib
<class 'numpy.distutils.system_info.atlas_info'>
NOT AVAILABLE
FOUND:
extra_compile_args = ['-faltivec', '-I/System/Library/Frameworks/vecLib.framework/Headers']
extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]
/opt/homebrew/Cellar/python@3.9/3.9.6/Frameworks/Python.framework/Versions/3.9/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'define_macros'
warnings.warn(msg)
running bdist_wheel
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
building library "npymath" sources
adding 'build/src.macosx-11-arm64-3.9/numpy/core/src/npymath' to include_dirs.
None - nothing done with h_files = ['build/src.macosx-11-arm64-3.9/numpy/core/src/npymath/npy_math_internal.h']
building library "npysort" sources
adding 'build/src.macosx-11-arm64-3.9/numpy/core/src/common' to include_dirs.
None - nothing done with h_files = ['build/src.macosx-11-arm64-3.9/numpy/core/src/common/npy_sort.h', 'build/src.macosx-11-arm64-3.9/numpy/core/src/common/npy_partition.h', 'build/src.macosx-11-arm64-3.9/numpy/core/src/common/npy_binsearch.h']
building library "npyrandom" sources
building extension "numpy.core._multiarray_tests" sources
building extension "numpy.core._multiarray_umath" sources
adding 'build/src.macosx-11-arm64-3.9/numpy/core/src/umath' to include_dirs.
adding 'build/src.macosx-11-arm64-3.9/numpy/core/src/npymath' to include_dirs.
adding 'build/src.macosx-11-arm64-3.9/numpy/core/src/common' to include_dirs.
numpy.core - nothing done with h_files = ['build/src.macosx-11-arm64-3.9/numpy/core/src/umath/funcs.inc', 'build/src.macosx-11-arm64-3.9/numpy/core/src/umath/simd.inc', 'build/src.macosx-11-arm64-3.9/numpy/core/src/umath/loops.h', 'build/src.macosx-11-arm64-3.9/numpy/core/src/umath/matmul.h', 'build/src.macosx-11-arm64-3.9/numpy/core/src/umath/clip.h', 'build/src.macosx-11-arm64-3.9/numpy/core/src/npymath/npy_math_internal.h', 'build/src.macosx-11-arm64-3.9/numpy/core/src/common/templ_common.h', 'build/src.macosx-11-arm64-3.9/numpy/core/include/numpy/config.h', 'build/src.macosx-11-arm64-3.9/numpy/core/include/numpy/_numpyconfig.h', 'build/src.macosx-11-arm64-3.9/numpy/core/include/numpy/__multiarray_api.h', 'build/src.macosx-11-arm64-3.9/numpy/core/include/numpy/__ufunc_api.h']
building extension "numpy.core._umath_tests" sources
building extension "numpy.core._rational_tests" sources
building extension "numpy.core._struct_ufunc_tests" sources
building extension "numpy.core._operand_flag_tests" sources
building extension "numpy.fft._pocketfft_internal" sources
building extension "numpy.linalg.lapack_lite" sources
building extension "numpy.linalg._umath_linalg" sources
building extension "numpy.random._mt19937" sources
building extension "numpy.random._philox" sources
building extension "numpy.random._pcg64" sources
building extension "numpy.random._sfc64" sources
building extension "numpy.random._common" sources
building extension "numpy.random.bit_generator" sources
building extension "numpy.random._generator" sources
building extension "numpy.random._bounded_integers" sources
building extension "numpy.random.mtrand" sources
building data_files sources
build_src: building npy-pkg config files
running build_py
creating build/lib.macosx-11-arm64-3.9
creating build/lib.macosx-11-arm64-3.9/numpy
copying numpy/conftest.py -> build/lib.macosx-11-arm64-3.9/numpy
copying numpy/version.py -> build/lib.macosx-11-arm64-3.9/numpy
copying numpy/_globals.py -> build/lib.macosx-11-arm64-3.9/numpy
copying numpy/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy
copying numpy/dual.py -> build/lib.macosx-11-arm64-3.9/numpy
copying numpy/_distributor_init.py -> build/lib.macosx-11-arm64-3.9/numpy
copying numpy/setup.py -> build/lib.macosx-11-arm64-3.9/numpy
copying numpy/ctypeslib.py -> build/lib.macosx-11-arm64-3.9/numpy
copying numpy/matlib.py -> build/lib.macosx-11-arm64-3.9/numpy
copying numpy/_pytesttester.py -> build/lib.macosx-11-arm64-3.9/numpy
copying build/src.macosx-11-arm64-3.9/numpy/__config__.py -> build/lib.macosx-11-arm64-3.9/numpy
creating build/lib.macosx-11-arm64-3.9/numpy/compat
copying numpy/compat/py3k.py -> build/lib.macosx-11-arm64-3.9/numpy/compat
copying numpy/compat/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/compat
copying numpy/compat/setup.py -> build/lib.macosx-11-arm64-3.9/numpy/compat
copying numpy/compat/_inspect.py -> build/lib.macosx-11-arm64-3.9/numpy/compat
creating build/lib.macosx-11-arm64-3.9/numpy/compat/tests
copying numpy/compat/tests/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/compat/tests
copying numpy/compat/tests/test_compat.py -> build/lib.macosx-11-arm64-3.9/numpy/compat/tests
creating build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/umath.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/fromnumeric.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/_dtype.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/_add_newdocs.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/_methods.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/_internal.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/_string_helpers.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/multiarray.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/_asarray.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/records.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/setup_common.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/memmap.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/overrides.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/getlimits.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/_dtype_ctypes.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/defchararray.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/shape_base.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/machar.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/setup.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/numeric.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/function_base.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/einsumfunc.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/umath_tests.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/_ufunc_config.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/_exceptions.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/numerictypes.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/_type_aliases.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/cversions.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/arrayprint.py -> build/lib.macosx-11-arm64-3.9/numpy/core
copying numpy/core/code_generators/generate_numpy_api.py -> build/lib.macosx-11-arm64-3.9/numpy/core
creating build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_numerictypes.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_scalar_methods.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_scalarmath.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_item_selection.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_machar.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_unicode.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_arrayprint.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_scalarbuffer.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_indexerrors.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_print.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_half.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_mem_overlap.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_shape_base.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_deprecations.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_errstate.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_records.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_scalarinherit.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_indexing.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_umath.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_numeric.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_function_base.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_datetime.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test__exceptions.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_extint128.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_umath_complex.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/_locales.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_defchararray.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_conversion_utils.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_scalarprint.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_abc.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_ufunc.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_dtype.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_umath_accuracy.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_getlimits.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_einsum.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_api.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_longdouble.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_overrides.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_scalar_ctors.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_multiarray.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_memmap.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_nditer.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_cpu_features.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_protocols.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
copying numpy/core/tests/test_regression.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
creating build/lib.macosx-11-arm64-3.9/numpy/distutils
copying numpy/distutils/unixccompiler.py -> build/lib.macosx-11-arm64-3.9/numpy/distutils
copying numpy/distutils/numpy_distribution.py -> build/lib.macosx-11-arm64-3.9/numpy/distutils
copying numpy/distutils/conv_template.py -> build/lib.macosx-11-arm64-3.9/numpy/distutils
copying numpy/distutils/cpuinfo.py -> build/lib.macosx-11-arm64-3.9/numpy/distutils
copying numpy/distutils/ccompiler.py -> build/lib.macosx-11-arm64-3.9/numpy/distutils
copying numpy/distutils/msvc9compiler.py -> build/lib.macosx-11-arm64-3.9/numpy/distutils
copying numpy/distutils/npy_pkg_config.py -> build/lib.macosx-11-arm64-3.9/numpy/distutils
copying numpy/distutils/misc_util.py -> build/lib.macosx-11-arm64-3.9/numpy/distutils
copying numpy/distutils/log.py -> build/lib.macosx-11-arm64-3.9/numpy/distutils
copying numpy/distutils/line_endings.py -> build/lib.macosx-11-arm64-3.9/numpy/distutils
copying numpy/distutils/lib2def.py -> build/lib.macosx-11-arm64-3.9/numpy/distutils
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copying numpy/ma/tests/test_mrecords.py -> build/lib.macosx-11-arm64-3.9/numpy/ma/tests
copying numpy/ma/tests/test_regression.py -> build/lib.macosx-11-arm64-3.9/numpy/ma/tests
creating build/lib.macosx-11-arm64-3.9/numpy/matrixlib
copying numpy/matrixlib/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib
copying numpy/matrixlib/setup.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib
copying numpy/matrixlib/defmatrix.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib
creating build/lib.macosx-11-arm64-3.9/numpy/matrixlib/tests
copying numpy/matrixlib/tests/test_matrix_linalg.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib/tests
copying numpy/matrixlib/tests/test_defmatrix.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib/tests
copying numpy/matrixlib/tests/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib/tests
copying numpy/matrixlib/tests/test_interaction.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib/tests
copying numpy/matrixlib/tests/test_numeric.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib/tests
copying numpy/matrixlib/tests/test_masked_matrix.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib/tests
copying numpy/matrixlib/tests/test_multiarray.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib/tests
copying numpy/matrixlib/tests/test_regression.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib/tests
creating build/lib.macosx-11-arm64-3.9/numpy/polynomial
copying numpy/polynomial/laguerre.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
copying numpy/polynomial/_polybase.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
copying numpy/polynomial/polyutils.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
copying numpy/polynomial/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
copying numpy/polynomial/setup.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
copying numpy/polynomial/hermite_e.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
copying numpy/polynomial/chebyshev.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
copying numpy/polynomial/polynomial.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
copying numpy/polynomial/legendre.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
copying numpy/polynomial/hermite.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
creating build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
copying numpy/polynomial/tests/test_chebyshev.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
copying numpy/polynomial/tests/test_hermite_e.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
copying numpy/polynomial/tests/test_polynomial.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
copying numpy/polynomial/tests/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
copying numpy/polynomial/tests/test_laguerre.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
copying numpy/polynomial/tests/test_legendre.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
copying numpy/polynomial/tests/test_printing.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
copying numpy/polynomial/tests/test_hermite.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
copying numpy/polynomial/tests/test_classes.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
copying numpy/polynomial/tests/test_polyutils.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
creating build/lib.macosx-11-arm64-3.9/numpy/random
copying numpy/random/_pickle.py -> build/lib.macosx-11-arm64-3.9/numpy/random
copying numpy/random/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/random
copying numpy/random/setup.py -> build/lib.macosx-11-arm64-3.9/numpy/random
creating build/lib.macosx-11-arm64-3.9/numpy/random/tests
copying numpy/random/tests/test_generator_mt19937.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
copying numpy/random/tests/test_randomstate.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
copying numpy/random/tests/test_direct.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
copying numpy/random/tests/test_extending.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
copying numpy/random/tests/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
copying numpy/random/tests/test_smoke.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
copying numpy/random/tests/test_randomstate_regression.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
copying numpy/random/tests/test_seed_sequence.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
copying numpy/random/tests/test_generator_mt19937_regressions.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
copying numpy/random/tests/test_random.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
copying numpy/random/tests/test_regression.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
creating build/lib.macosx-11-arm64-3.9/numpy/testing
copying numpy/testing/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/testing
copying numpy/testing/setup.py -> build/lib.macosx-11-arm64-3.9/numpy/testing
copying numpy/testing/utils.py -> build/lib.macosx-11-arm64-3.9/numpy/testing
copying numpy/testing/print_coercion_tables.py -> build/lib.macosx-11-arm64-3.9/numpy/testing
creating build/lib.macosx-11-arm64-3.9/numpy/testing/_private
copying numpy/testing/_private/nosetester.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/_private
copying numpy/testing/_private/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/_private
copying numpy/testing/_private/noseclasses.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/_private
copying numpy/testing/_private/utils.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/_private
copying numpy/testing/_private/parameterized.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/_private
copying numpy/testing/_private/decorators.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/_private
creating build/lib.macosx-11-arm64-3.9/numpy/testing/tests
copying numpy/testing/tests/test_utils.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/tests
copying numpy/testing/tests/test_decorators.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/tests
copying numpy/testing/tests/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/tests
copying numpy/testing/tests/test_doctesting.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/tests
creating build/lib.macosx-11-arm64-3.9/numpy/tests
copying numpy/tests/test_warnings.py -> build/lib.macosx-11-arm64-3.9/numpy/tests
copying numpy/tests/test_matlib.py -> build/lib.macosx-11-arm64-3.9/numpy/tests
copying numpy/tests/test_ctypeslib.py -> build/lib.macosx-11-arm64-3.9/numpy/tests
copying numpy/tests/test_numpy_version.py -> build/lib.macosx-11-arm64-3.9/numpy/tests
copying numpy/tests/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/tests
copying numpy/tests/test_reloading.py -> build/lib.macosx-11-arm64-3.9/numpy/tests
copying numpy/tests/test_public_api.py -> build/lib.macosx-11-arm64-3.9/numpy/tests
copying numpy/tests/test_scripts.py -> build/lib.macosx-11-arm64-3.9/numpy/tests
running build_clib
customize UnixCCompiler
customize UnixCCompiler using new_build_clib
building 'npymath' library
compiling C sources
C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
creating build/temp.macosx-11-arm64-3.9
creating build/temp.macosx-11-arm64-3.9/numpy
creating build/temp.macosx-11-arm64-3.9/numpy/core
creating build/temp.macosx-11-arm64-3.9/numpy/core/src
creating build/temp.macosx-11-arm64-3.9/numpy/core/src/npymath
creating build/temp.macosx-11-arm64-3.9/build
creating build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9
creating build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9/numpy
creating build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9/numpy/core
creating build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9/numpy/core/src
creating build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9/numpy/core/src/npymath
compile options: '-Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/npymath -Inumpy/core/include -Ibuild/src.macosx-11-arm64-3.9/numpy/core/include/numpy -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/opt/homebrew/include -I/opt/homebrew/opt/openssl@1.1/include -I/opt/homebrew/opt/sqlite/include -I/Users/nathompson7/reproduce/include -I/opt/homebrew/Cellar/python@3.9/3.9.6/Frameworks/Python.framework/Versions/3.9/include/python3.9 -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/common -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/npymath -c'
clang: numpy/core/src/npymath/npy_math.c
clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npymath/npy_math_complex.c
clang: numpy/core/src/npymath/halffloat.c
clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npymath/ieee754.c
In file included from numpy/core/src/npymath/npy_math.c:9:
numpy/core/src/npymath/npy_math_internal.h.src:490:21: warning: incompatible pointer types passing 'npy_longdouble *' (aka 'double *') to parameter of type 'long double *' [-Wincompatible-pointer-types]
return modfl(x, iptr);
^~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/math.h:394:52: note: passing argument to parameter here
extern long double modfl(long double, long double *);
^
1 warning generated.
ar: adding 4 object files to build/temp.macosx-11-arm64-3.9/libnpymath.a
ranlib:@ build/temp.macosx-11-arm64-3.9/libnpymath.a
building 'npysort' library
compiling C sources
C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
creating build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9/numpy/core/src/npysort
compile options: '-Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/common -Inumpy/core/include -Ibuild/src.macosx-11-arm64-3.9/numpy/core/include/numpy -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/opt/homebrew/include -I/opt/homebrew/opt/openssl@1.1/include -I/opt/homebrew/opt/sqlite/include -I/Users/nathompson7/reproduce/include -I/opt/homebrew/Cellar/python@3.9/3.9.6/Frameworks/Python.framework/Versions/3.9/include/python3.9 -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/common -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/npymath -c'
clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npysort/mergesort.c
clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npysort/timsort.c
clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npysort/quicksort.c
clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npysort/heapsort.c
clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npysort/radixsort.c
clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npysort/selection.c
clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npysort/binsearch.c
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
npy_intp k;
^~~~~~~~~~~
numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
else if (0 && kth == num - 1) {
^
/* DISABLES CODE */ ( )
22 warnings generated.
ar: adding 7 object files to build/temp.macosx-11-arm64-3.9/libnpysort.a
ranlib:@ build/temp.macosx-11-arm64-3.9/libnpysort.a
building 'npyrandom' library
compiling C sources
C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
creating build/temp.macosx-11-arm64-3.9/numpy/random
creating build/temp.macosx-11-arm64-3.9/numpy/random/src
creating build/temp.macosx-11-arm64-3.9/numpy/random/src/distributions
compile options: '-Inumpy/core/include -Ibuild/src.macosx-11-arm64-3.9/numpy/core/include/numpy -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/opt/homebrew/include -I/opt/homebrew/opt/openssl@1.1/include -I/opt/homebrew/opt/sqlite/include -I/Users/nathompson7/reproduce/include -I/opt/homebrew/Cellar/python@3.9/3.9.6/Frameworks/Python.framework/Versions/3.9/include/python3.9 -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/common -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/npymath -c'
clang: numpy/random/src/distributions/logfactorial.c
clang: numpy/random/src/distributions/distributions.c
clang: numpy/random/src/distributions/random_mvhg_count.c
clang: numpy/random/src/distributions/random_mvhg_marginals.c
clang: numpy/random/src/distributions/random_hypergeometric.c
ar: adding 5 object files to build/temp.macosx-11-arm64-3.9/libnpyrandom.a
ranlib:@ build/temp.macosx-11-arm64-3.9/libnpyrandom.a
running build_ext
customize UnixCCompiler
customize UnixCCompiler using new_build_ext
building 'numpy.core._multiarray_tests' extension
compiling C sources
C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
creating build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9/numpy/core/src/multiarray
creating build/temp.macosx-11-arm64-3.9/numpy/core/src/common
compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -Inumpy/core/include -Ibuild/src.macosx-11-arm64-3.9/numpy/core/include/numpy -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/opt/homebrew/include -I/opt/homebrew/opt/openssl@1.1/include -I/opt/homebrew/opt/sqlite/include -I/Users/nathompson7/reproduce/include -I/opt/homebrew/Cellar/python@3.9/3.9.6/Frameworks/Python.framework/Versions/3.9/include/python3.9 -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/common -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/npymath -c'
clang: build/src.macosx-11-arm64-3.9/numpy/core/src/multiarray/_multiarray_tests.c
clang: numpy/core/src/common/mem_overlap.c
In file included from numpy/core/src/multiarray/_multiarray_tests.c.src:7:
In file included from numpy/core/include/numpy/npy_math.h:596:
numpy/core/src/npymath/npy_math_internal.h.src:490:21: warning: incompatible pointer types passing 'npy_longdouble *' (aka 'double *') to parameter of type 'long double *' [-Wincompatible-pointer-types]
return modfl(x, iptr);
^~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/math.h:394:52: note: passing argument to parameter here
extern long double modfl(long double, long double *);
^
numpy/core/src/multiarray/_multiarray_tests.c.src:1895:61: warning: format specifies type 'long double' but the argument has type 'npy_longdouble' (aka 'double') [-Wformat]
PyOS_snprintf(str, sizeof(str), "%.*Lg", precision, x);
~~~~~ ^
%.*g
2 warnings generated.
clang -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9/numpy/core/src/multiarray/_multiarray_tests.o build/temp.macosx-11-arm64-3.9/numpy/core/src/common/mem_overlap.o -L/opt/homebrew/lib -L/opt/homebrew/opt/openssl@1.1/lib -L/opt/homebrew/opt/sqlite/lib -Lbuild/temp.macosx-11-arm64-3.9 -lnpymath -o build/lib.macosx-11-arm64-3.9/numpy/core/_multiarray_tests.cpython-39-darwin.so
building 'numpy.core._multiarray_umath' extension
compiling C sources
C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
creating build/temp.macosx-11-arm64-3.9/numpy/core/src/multiarray
creating build/temp.macosx-11-arm64-3.9/numpy/core/src/umath
creating build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9/numpy/core/src/umath
creating build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9/numpy/core/src/common
creating build/temp.macosx-11-arm64-3.9/private
creating build/temp.macosx-11-arm64-3.9/private/var
creating build/temp.macosx-11-arm64-3.9/private/var/folders
creating build/temp.macosx-11-arm64-3.9/private/var/folders/wm
creating build/temp.macosx-11-arm64-3.9/private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn
creating build/temp.macosx-11-arm64-3.9/private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T
creating build/temp.macosx-11-arm64-3.9/private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-install-rt8dwclw
creating build/temp.macosx-11-arm64-3.9/private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-install-rt8dwclw/numpy_99fc1db8e0b64d64a094cdbef9fa6a63
creating build/temp.macosx-11-arm64-3.9/private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-install-rt8dwclw/numpy_99fc1db8e0b64d64a094cdbef9fa6a63/numpy
creating build/temp.macosx-11-arm64-3.9/private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-install-rt8dwclw/numpy_99fc1db8e0b64d64a094cdbef9fa6a63/numpy/_build_utils
creating build/temp.macosx-11-arm64-3.9/private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-install-rt8dwclw/numpy_99fc1db8e0b64d64a094cdbef9fa6a63/numpy/_build_utils/src
compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -DNO_ATLAS_INFO=3 -DHAVE_CBLAS -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/umath -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/npymath -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/common -Inumpy/core/include -Ibuild/src.macosx-11-arm64-3.9/numpy/core/include/numpy -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/opt/homebrew/include -I/opt/homebrew/opt/openssl@1.1/include -I/opt/homebrew/opt/sqlite/include -I/Users/nathompson7/reproduce/include -I/opt/homebrew/Cellar/python@3.9/3.9.6/Frameworks/Python.framework/Versions/3.9/include/python3.9 -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/common -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/npymath -c'
extra options: '-faltivec -I/System/Library/Frameworks/vecLib.framework/Headers'
clang: numpy/core/src/multiarray/alloc.c
clang: numpy/core/src/multiarray/array_assign_scalar.c
clang: numpy/core/src/multiarray/buffer.c
clang: numpy/core/src/multiarray/common.c
clang: numpy/core/src/multiarray/conversion_utils.c
clang: numpy/core/src/multiarray/datetime_strings.c
clang: build/src.macosx-11-arm64-3.9/numpy/core/src/multiarray/einsum.c
clang: numpy/core/src/multiarray/descriptor.c
clang: error: clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: numpy/core/src/multiarray/hashdescr.c
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: build/src.macosx-11-arm64-3.9/numpy/core/src/multiarray/lowlevel_strided_loops.c
clang: numpy/core/src/multiarray/multiarraymodule.c
clangclang: : error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: numpy/core/src/multiarray/nditer_constr.c
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: numpy/core/src/multiarray/refcount.c
clang: numpy/core/src/multiarray/vdot.c
clang: numpy/core/src/multiarray/temp_elide.c
clang: numpy/core/src/multiarray/scalarapi.c
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: build/src.macosx-11-arm64-3.9/numpy/core/src/umath/loops.c
clang: numpy/core/src/umath/ufunc_object.c
clang: numpy/core/src/umath/ufunc_type_resolution.c
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npymath/ieee754.c
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: numpy/core/src/common/array_assign.c
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: numpy/core/src/common/ucsnarrow.c
clang: build/src.macosx-11-arm64-3.9/numpy/core/src/common/npy_cpu_features.c
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: /private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-install-rt8dwclw/numpy_99fc1db8e0b64d64a094cdbef9fa6a63/numpy/_build_utils/src/apple_sgemv_fix.c
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
error: Command "clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -DNO_ATLAS_INFO=3 -DHAVE_CBLAS -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/umath -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/npymath -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/common -Inumpy/core/include -Ibuild/src.macosx-11-arm64-3.9/numpy/core/include/numpy -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/opt/homebrew/include -I/opt/homebrew/opt/openssl@1.1/include -I/opt/homebrew/opt/sqlite/include -I/Users/nathompson7/reproduce/include -I/opt/homebrew/Cellar/python@3.9/3.9.6/Frameworks/Python.framework/Versions/3.9/include/python3.9 -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/common -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/npymath -c numpy/core/src/multiarray/alloc.c -o build/temp.macosx-11-arm64-3.9/numpy/core/src/multiarray/alloc.o -MMD -MF build/temp.macosx-11-arm64-3.9/numpy/core/src/multiarray/alloc.o.d -faltivec -I/System/Library/Frameworks/vecLib.framework/Headers" failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for numpy
Failed to build numpy
ERROR: Could not build wheels for numpy which use PEP 517 and cannot be installed directly
----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/61/0f/e7e57c4b87d027d74acf75e0fc49aff8aca87d6ff7b2e655c183a714044d/h5py-3.3.0.tar.gz#sha256=e0dac887d779929778b3cfd13309a939359cc9e74756fc09af7c527a82797186 (from https://pypi.org/simple/h5py/) (requires-python:>=3.7). Command errored out with exit status 1: /Users/nathompson7/reproduce/bin/python3.9 /private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-standalone-pip-fnjm6ps0/__env_pip__.zip/pip install --ignore-installed --no-user --prefix /private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-build-env-1upvtdul/normal --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- 'Cython>=0.29.15; python_version >= "3.9"' 'numpy==1.14.5; python_version == "3.7"' 'numpy==1.19.3; python_version >= "3.9"' pkgconfig 'numpy==1.17.5; python_version == "3.8"' 'Cython>=0.29.14; python_version == "3.8"' 'Cython>=0.29; python_version < "3.8"' Check the logs for full command output.
ERROR: Could not find a version that satisfies the requirement h5py>=3.3.0 (from versions: 2.2.1, 2.3.0b1, 2.3.0, 2.3.1, 2.4.0b1, 2.4.0, 2.5.0, 2.6.0, 2.7.0rc2, 2.7.0, 2.7.1, 2.8.0rc1, 2.8.0, 2.9.0rc1, 2.9.0, 2.10.0, 3.0.0rc1, 3.0.0, 3.1.0, 3.2.0, 3.2.1, 3.3.0)
ERROR: No matching distribution found for h5py>=3.3.0
Issue Analytics
- State:
- Created 2 years ago
- Comments:5 (4 by maintainers)
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@NAThompson , @hagan correctly identified that as a numpy installation issue.
@hagan Those are the minimum versions of numpy we support, it is expected that h5py will work with any newer version. When you access data from a dataset we will return a numpy array and use numpy heavily internally to handle the buffers that libhdf5 returns so you are definitely reliant on numpy working correctly for h5py to work correctly!
@tacaswell I’ve opened #1993, which I believe should fix this. Could you take a look and let me know what you think?