plotnine compilation issue in Python 3.7
See original GitHub issueI am not sure about the following error that I get when trying to install plotnine in the environment of Python 3.7. Do I miss a pre-requirement or is this issue related with the one describe here, which caused by an old cython version that was used for the build?: https://github.com/pandas-dev/pandas/issues/21785
sudo pip install plotnine
...PRUNED BY ME...
In file included from /usr/include/python3.7m/Python.h:128,
from _proj.c:4:
/usr/include/python3.7m/abstract.h:500:17: note: declared here
PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj,
^~~~~~~~~~~~~~~~~~~~~~
_proj.c: In function ‘__Pyx_ExceptionSave’:
_proj.c:7421:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
*type = tstate->exc_type;
^~~~~~~~
curexc_type
_proj.c:7422:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
*value = tstate->exc_value;
^~~~~~~~~
curexc_value
_proj.c:7423:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
*tb = tstate->exc_traceback;
^~~~~~~~~~~~~
curexc_traceback
_proj.c: In function ‘__Pyx_ExceptionReset’:
_proj.c:7435:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
tmp_type = tstate->exc_type;
^~~~~~~~
curexc_type
_proj.c:7436:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
tmp_value = tstate->exc_value;
^~~~~~~~~
curexc_value
_proj.c:7437:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
tmp_tb = tstate->exc_traceback;
^~~~~~~~~~~~~
curexc_traceback
_proj.c:7438:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
tstate->exc_type = type;
^~~~~~~~
curexc_type
_proj.c:7439:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
tstate->exc_value = value;
^~~~~~~~~
curexc_value
_proj.c:7440:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
tstate->exc_traceback = tb;
^~~~~~~~~~~~~
curexc_traceback
_proj.c: In function ‘__Pyx_GetException’:
_proj.c:7483:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
tmp_type = tstate->exc_type;
^~~~~~~~
curexc_type
_proj.c:7484:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
tmp_value = tstate->exc_value;
^~~~~~~~~
curexc_value
_proj.c:7485:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
tmp_tb = tstate->exc_traceback;
^~~~~~~~~~~~~
curexc_traceback
_proj.c:7486:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
tstate->exc_type = local_type;
^~~~~~~~
curexc_type
_proj.c:7487:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
tstate->exc_value = local_value;
^~~~~~~~~
curexc_value
_proj.c:7488:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
tstate->exc_traceback = local_tb;
^~~~~~~~~~~~~
curexc_traceback
error: command 'gcc' failed with exit status 1
Thanks for any help. And keep up the great project, I am a happy user of plotnine for more than a year.
Issue Analytics
- State:
- Created 5 years ago
- Comments:5 (3 by maintainers)
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@has2k1 Thanks for your answer. After some research and fiddling around I assume the issue is caused by the package pyproj, which is a dependency of geopandas, which is itself a dependency of plotnine. Any attempt to directly install pyproj fails because it probably uses old, precompiled cython files (see https://github.com/jswhit/pyproj/issues/136).
The simple solution is to install plotnine without further dependencies (i.e. pyproj) using the following command: pip install -U --no-deps plotnine
@jorisvandenbossche, thank you for the advice, I will do as suggested.