canvas.line freezes indefinitely with numba 0.51.1
See original GitHub issueALL software version info
python 3.8 numba 0.51.1 datashader 0.11.1 bokeh 2.2.0 numpy 1.19.1
Description of expected behavior and the observed behavior
Observed behavior: canvas.line
function freezes indefinitely
Complete, minimal, self-contained example code that reproduces the issue
# code goes here between backticks
import datetime
import pandas as pd
import numpy as np
import xarray as xr
import datashader as ds
import datashader.transfer_functions as tf
from collections import OrderedDict
# Constants
np.random.seed(2)
n = 100000 # Number of points
cols = list('abcdefg') # Column names of samples
start = datetime.datetime(2010, 10, 1, 0) # Start time
# Generate a fake signal
signal = np.random.normal(0, 0.3, size=n).cumsum() + 50
# Generate many noisy samples from the signal
noise = lambda var, bias, n: np.random.normal(bias, var, n)
data = {c: signal + noise(1, 10*(np.random.random() - 0.5), n) for c in cols}
# Add some "rogue lines" that differ from the rest
cols += ['x'] ; data['x'] = signal + np.random.normal(0, 0.02, size=n).cumsum() # Gradually diverges
cols += ['y'] ; data['y'] = signal + noise(1, 20*(np.random.random() - 0.5), n) # Much noisier
cols += ['z'] ; data['z'] = signal # No noise at all
# Pick a few samples from the first line and really blow them out
locs = np.random.choice(n, 10)
data['a'][locs] *= 2
# Create a dataframe
data['Time'] = [start + datetime.timedelta(minutes=1)*i for i in range(n)]
df = pd.DataFrame(data)
df['ITime'] = pd.to_datetime(df['Time']).astype('int64')
# Default plot ranges:
x_range = (df.iloc[0].ITime, df.iloc[-1].ITime)
y_range = (1.2*signal.min(), 1.2*signal.max())
print("x_range: {0} y_range: {1}".format(x_range,y_range))
cvs = ds.Canvas(x_range=x_range, y_range=y_range, plot_height=300, plot_width=900)
aggs= OrderedDict((c, cvs.line(df, 'ITime', c)) for c in cols)
img = tf.shade(aggs['a'])
cc @philippjfr
Issue Analytics
- State:
- Created 3 years ago
- Comments:13 (4 by maintainers)
Top Results From Across the Web
Installation — Numba 0.50.1 documentation
To enable ROCm support in Numba, conda is required, so begin with an Anaconda or Miniconda installation with Numba 0.40 or later installed....
Read more >ubuntupackages.cgi - UDD - Debian
... aspell-hy 0.10.0-0-3.2 aspell-id 1.2-0-0ubuntu1 aspell-is 0.51.1-0-2 aspell-it ... casacore-data-lines 0+git2016.11.26-2.1 casacore-data-observatories ...
Read more >Modern Javascript for the Impatient This Page Intentionally ...
First, note that the spread operator is used with an argument, and the rest syntax applies to a variable declaration. Math.max(...numbers) // Spread...
Read more >conda-forge
argparse, 1.4.0, PSF, X, Python command-line parsing library ... 0.0.3, doc · dev, GPLv2+, Celery task subclass for jobs that should run forever....
Read more >Issues-holoviz/datashader - PythonTechWorld
canvas.line freezes indefinitely with numba 0.51.1. 888. ALL software version info python 3.8 numba 0.51.1 datashader 0.11.1 bokeh 2.2.0 numpy 1.19.1 ...
Read more >Top Related Medium Post
No results found
Top Related StackOverflow Question
No results found
Troubleshoot Live Code
Lightrun enables developers to add logs, metrics and snapshots to live code - no restarts or redeploys required.
Start FreeTop Related Reddit Thread
No results found
Top Related Hackernoon Post
No results found
Top Related Tweet
No results found
Top Related Dev.to Post
No results found
Top Related Hashnode Post
No results found
Top GitHub Comments
can confirm this is now fixed with numba 0.51.2, @gmarkall thanks for the quick fix.
After digging for a bit it might have something to do with https://github.com/numba/numba/pull/6146