python3.10 compatibility

Motivation for the feature

Python3.10 is standard now: Ubuntu 22.04 came out last month and uses it as its default. But ivadomed is only marked compatible up to 3.9, meaning it cannot be installed on Ubuntu 22.04, or anyone else using an up-to-date system.

This follows https://github.com/ivadomed/ivadomed/issues/770.

Description of the feature

Change

https://github.com/ivadomed/ivadomed/blob/1da019b80be95d99905579dc66de15538141e487/setup.py#L35

to read

    python_requires='>=3.6,<3.11',

and fix anything this breaks.

Additional context

Due to https://github.com/neuropoly/computers/issues/338, ivadomed now has to hide inside of conda envs set up like conda create -n my_env python==3.8 when we are using it internally on romane.neuro.polymtl.ca or rosenberg.neuro.polymtl.ca to do research. And come to think of it, this would affect SCT too, which we usually run on joplin.neuro.polymtl.ca – except SCT bundles its own conda.

It would be nice to have the flexibility to install ivadomed with the faster pip install --user or python -m venv again.

[GeorgeS2019]

@kanishk16

onnxruntime 1.12 that supports python 3.10 is scheduled to be released by mid-July. Also, https://github.com/microsoft/onnxruntime/issues/9782 suggests to downgrade to 3.9.x. I was wondering if we could wait till mid-July and in the meantime bump up torch & drop support for python 3.6.

Information where to download onnxruntime 1.12 is embedded within the notebook

The notebook [updated ~1 month ago] requirement for onnxruntime 1.12 is mandatory.

from packaging import version
from onnxruntime import __version__ as ort_version

if version.parse(ort_version) >= version.parse("1.12.0"):
    from onnxruntime.transformers.models.gpt2.gpt2_helper import Gpt2Helper, MyGPT2LMHeadModel
else:
    from onnxruntime.transformers.gpt2_helper import Gpt2Helper, MyGPT2LMHeadModel

    raise RuntimeError("Please install onnxruntime 1.12.0 or later to run this notebook")

Onnxruntime 1.12 needs to be provided as nightly (not just for python, but also for c#, c++ etc. )

[kanishk16]

onnxruntime 3.12 that supports python 3.10 is scheduled to be released by mid-July. Also, https://github.com/microsoft/onnxruntime/issues/9782 suggests to downgrade to 3.9.x. I was wondering if we could wait till mid-July and in the meantime bump up torch & drop support for python 3.6.