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encountering FileNotFoundError during parse_node
See original GitHub issueGetting following error with pyroSAR installation on ubutu OS.
/data/anaconda3/envs/datagateway3/snap/bin/../platform/lib/nbexec: WARNING: environment variable DISPLAY is not set
Unrecognized option --dummytest
Traceback (most recent call last):
File "/data/datagateway/flood.py", line 250, in <module>
product = read(path_to_sentinel_data, type=process_type)
File "/data/datagateway/flood.py", line 137, in read
node = parse_node('Read')
File "/data/anaconda3/envs/datagatewayx/lib/python3.10/site-packages/pyroSAR/snap/auxil.py", line 86, in parse_node
version = snap.get_version('s1tbx')['version']
File "/data/anaconda3/envs/datagatewayx/lib/python3.10/site-packages/pyroSAR/examine.py", line 350, in get_version
with open(fname, 'r') as m:
FileNotFoundError: [Errno 2] No such file or directory: '/home/ubuntu/.snap/system/var/log/messages.log'
I am having following conda installation
# packages in environment at /data/anaconda3/envs/datagatewayx:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 1_gnu conda-forge
affine 2.3.0 py_0 conda-forge
alsa-lib 1.2.3 h516909a_0 conda-forge
anyjson 0.3.3 pyhd8ed1ab_1004 conda-forge
argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py310h6acc77f_1 conda-forge
arrow 1.2.2 pyhd8ed1ab_0 conda-forge
attrs 21.4.0 pyhd8ed1ab_0 conda-forge
babel 2.9.1 pyh44b312d_0 conda-forge
bcrypt 3.2.0 py310h6acc77f_2 conda-forge
blosc 1.21.0 h9c3ff4c_0 conda-forge
boost-cpp 1.74.0 h6cacc03_7 conda-forge
boto3 1.20.50 pyhd8ed1ab_0 conda-forge
botocore 1.23.50 pyhd8ed1ab_0 conda-forge
branca 0.4.2 pyhd8ed1ab_0 conda-forge
brotli 1.0.9 h7f98852_6 conda-forge
brotli-bin 1.0.9 h7f98852_6 conda-forge
brotlipy 0.7.0 py310h6acc77f_1003 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.18.1 h7f98852_0 conda-forge
ca-certificates 2021.10.26 h06a4308_2
cairo 1.16.0 ha00ac49_1009 conda-forge
certifi 2021.10.8 py310hff52083_1 conda-forge
cffi 1.15.0 py310h0fdd8cc_0 conda-forge
cfitsio 4.0.0 h9a35b8e_0 conda-forge
charset-normalizer 2.0.11 pyhd8ed1ab_0 conda-forge
click 8.0.3 py310hff52083_1 conda-forge
click-plugins 1.1.1 py_0 conda-forge
cligj 0.7.2 pyhd8ed1ab_1 conda-forge
colorama 0.4.4 pyh9f0ad1d_0 conda-forge
colour 0.1.5 py_0 conda-forge
cryptography 36.0.0 py310h9ce1e76_0
curl 7.81.0 h2574ce0_0 conda-forge
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
dbus 1.13.18 hb2f20db_0
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
dill 0.3.4 pyhd8ed1ab_0 conda-forge
eodag 2.3.4 pyhd8ed1ab_0 conda-forge
expat 2.4.4 h9c3ff4c_0 conda-forge
fiona 1.8.21 py310hfb73927_0 conda-forge
flasgger 0.9.5 pyhd8ed1ab_1 conda-forge
flask 2.0.2 pyhd8ed1ab_0 conda-forge
flit-core 3.6.0 pyhd8ed1ab_0 conda-forge
folium 0.12.1.post1 pyhd8ed1ab_1 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.13.96 ha180cfb_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.29.1 py310h6acc77f_0 conda-forge
freetype 2.11.0 h70c0345_0
freexl 1.0.6 h7f98852_0 conda-forge
fribidi 1.0.10 h516909a_0 conda-forge
furl 2.1.3 pyhd8ed1ab_0 conda-forge
gdal 3.4.1 pypi_0 pypi
geoalchemy2 0.9.2 pyhd3eb1b0_0
geojson 2.5.0 py_0 conda-forge
geopandas 0.10.2 pyhd8ed1ab_1 conda-forge
geopandas-base 0.10.2 pyha770c72_1 conda-forge
geos 3.10.2 h9c3ff4c_0 conda-forge
geotiff 1.7.0 h6593c0a_6 conda-forge
gettext 0.21.0 hf68c758_0
giflib 5.2.1 h516909a_2 conda-forge
glib 2.70.2 h780b84a_2 conda-forge
glib-tools 2.70.2 h780b84a_2 conda-forge
greenlet 1.1.2 py310h122e73d_1 conda-forge
gst-plugins-base 1.18.5 hf529b03_3 conda-forge
gstreamer 1.18.5 h9f60fe5_3 conda-forge
hdf4 4.2.15 h10796ff_3 conda-forge
hdf5 1.12.1 nompi_h2750804_103 conda-forge
icu 69.1 h9c3ff4c_0 conda-forge
idna 3.3 pyhd8ed1ab_0 conda-forge
importlib-metadata 4.10.1 py310hff52083_0 conda-forge
importlib_resources 5.4.0 pyhd8ed1ab_0 conda-forge
infinity 1.5 pyhd8ed1ab_0 conda-forge
intervals 0.9.2 pyhd8ed1ab_0 conda-forge
itsdangerous 2.0.1 pyhd8ed1ab_0 conda-forge
jbig 2.1 h7f98852_2003 conda-forge
jinja2 3.0.3 pyhd8ed1ab_0 conda-forge
jmespath 0.10.0 pyh9f0ad1d_0 conda-forge
joblib 1.1.0 pyhd8ed1ab_0 conda-forge
jpeg 9e h7f98852_0 conda-forge
json-c 0.15 h98cffda_0 conda-forge
jsonpath-ng 1.5.3 pyhd8ed1ab_0 conda-forge
jsonschema 4.4.0 pyhd8ed1ab_0 conda-forge
kealib 1.4.14 h87e4c3c_3 conda-forge
kiwisolver 1.3.2 py310h91b1402_1 conda-forge
krb5 1.19.2 hcc1bbae_3 conda-forge
lcms2 2.12 hddcbb42_0 conda-forge
ld_impl_linux-64 2.36.1 hea4e1c9_2 conda-forge
lerc 3.0 h9c3ff4c_0 conda-forge
libblas 3.9.0 13_linux64_openblas conda-forge
libbrotlicommon 1.0.9 h7f98852_6 conda-forge
libbrotlidec 1.0.9 h7f98852_6 conda-forge
libbrotlienc 1.0.9 h7f98852_6 conda-forge
libcblas 3.9.0 13_linux64_openblas conda-forge
libclang 13.0.1 default_hc23dcda_0 conda-forge
libcurl 7.81.0 h2574ce0_0 conda-forge
libdap4 3.20.6 hd7c4107_2 conda-forge
libdeflate 1.8 h7f98852_0 conda-forge
libedit 3.1.20210910 h7f8727e_0
libev 4.33 h516909a_1 conda-forge
libevent 2.1.10 h9b69904_4 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libgcc-ng 11.2.0 h1d223b6_12 conda-forge
libgdal 3.4.1 h7b6f8d3_2 conda-forge
libgfortran-ng 11.2.0 h69a702a_12 conda-forge
libgfortran5 11.2.0 h5c6108e_12 conda-forge
libglib 2.70.2 h174f98d_2 conda-forge
libgomp 11.2.0 h1d223b6_12 conda-forge
libiconv 1.16 h516909a_0 conda-forge
libimagequant 2.17.0 h7f98852_1 conda-forge
libkml 1.3.0 h238a007_1014 conda-forge
liblapack 3.9.0 13_linux64_openblas conda-forge
libllvm13 13.0.1 hf817b99_0 conda-forge
libnetcdf 4.8.1 nompi_hb3fd0d9_101 conda-forge
libnghttp2 1.46.0 h812cca2_0 conda-forge
libnsl 2.0.0 h7f98852_0 conda-forge
libogg 1.3.5 h27cfd23_1
libopenblas 0.3.18 pthreads_h8fe5266_0 conda-forge
libopus 1.3.1 h7f98852_1 conda-forge
libpng 1.6.37 hed695b0_2 conda-forge
libpq 14.1 hd57d9b9_1 conda-forge
librttopo 1.1.0 hf69c175_9 conda-forge
libspatialindex 1.9.3 h9c3ff4c_4 conda-forge
libspatialite 5.0.1 h0e567f8_14 conda-forge
libssh2 1.10.0 ha56f1ee_2 conda-forge
libstdcxx-ng 11.2.0 he4da1e4_12 conda-forge
libtiff 4.3.0 h6f004c6_2 conda-forge
libuuid 2.32.1 h14c3975_1000 conda-forge
libvorbis 1.3.7 he1b5a44_0 conda-forge
libwebp 1.2.2 h3452ae3_0 conda-forge
libwebp-base 1.2.2 h7f98852_1 conda-forge
libxcb 1.13 h7f98852_1004 conda-forge
libxkbcommon 1.0.3 he3ba5ed_0 conda-forge
libxml2 2.9.12 h885dcf4_1 conda-forge
libxslt 1.1.33 h0ef7038_3 conda-forge
libzip 1.8.0 h4de3113_1 conda-forge
libzlib 1.2.11 h36c2ea0_1013 conda-forge
lxml 4.7.1 py310ha5446b1_0 conda-forge
lz4-c 1.9.3 h9c3ff4c_1 conda-forge
mapclassify 2.4.3 pyhd8ed1ab_0 conda-forge
markdown 3.3.6 pyhd8ed1ab_0 conda-forge
markupsafe 2.0.1 py310h6acc77f_1 conda-forge
matplotlib 3.5.1 py310hff52083_0 conda-forge
matplotlib-base 3.5.1 py310h23f4a51_0 conda-forge
mistune 2.0.2 pyhd8ed1ab_0 conda-forge
multiprocess 0.70.12.2 py310h6acc77f_1 conda-forge
munch 2.5.0 py_0 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mysql-common 8.0.28 ha770c72_0 conda-forge
mysql-libs 8.0.28 hfa10184_0 conda-forge
ncurses 6.3 h9c3ff4c_0 conda-forge
networkx 2.6.3 pyhd8ed1ab_1 conda-forge
nspr 4.33 h295c915_0
nss 3.74 hb5efdd6_0 conda-forge
numpy 1.22.2 py310h454958d_0 conda-forge
openjpeg 2.4.0 hb52868f_1 conda-forge
openssl 1.1.1m h7f8727e_0
orderedmultidict 1.0.1 py_0 conda-forge
owslib 0.25.0 pyhd8ed1ab_0 conda-forge
packaging 21.3 pyhd8ed1ab_0 conda-forge
pandas 1.4.0 py310hb5077e9_0 conda-forge
passlib 1.7.4 pyh9f0ad1d_0 conda-forge
pathos 0.2.8 pyhd8ed1ab_0 conda-forge
pcre 8.45 h9c3ff4c_0 conda-forge
pendulum 2.1.2 pyhd8ed1ab_1 conda-forge
phonenumbers 8.12.42 pyhd8ed1ab_0 conda-forge
pillow 9.0.1 py310h2f95282_0 conda-forge
pip 22.0.3 pyhd8ed1ab_0 conda-forge
pixman 0.40.0 h36c2ea0_0 conda-forge
ply 3.11 py_1 conda-forge
poppler 21.11.0 ha39eefc_0 conda-forge
poppler-data 0.4.11 hd8ed1ab_0 conda-forge
postgresql 14.1 h2510834_1 conda-forge
pox 0.3.0 pyhd8ed1ab_0 conda-forge
ppft 1.6.6.4 pyhd8ed1ab_0 conda-forge
progressbar2 4.0.0 pyhd8ed1ab_0 conda-forge
proj 8.2.1 h277dcde_0 conda-forge
psycopg2 2.9.3 py310h6acc77f_0 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pyopenssl 22.0.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.7 pyhd8ed1ab_0 conda-forge
pyproj 3.3.0 py310h9e0d750_1 conda-forge
pyqt 5.12.3 py310hff52083_8 conda-forge
pyqt-impl 5.12.3 py310h1f8e252_8 conda-forge
pyqt5-sip 4.19.18 py310h122e73d_8 conda-forge
pyqtchart 5.12 py310hfcd6d55_8 conda-forge
pyqtwebengine 5.12.1 py310hfcd6d55_8 conda-forge
pyrosar 0.15.1 pyhd8ed1ab_0 conda-forge
pyrsistent 0.18.1 py310h6acc77f_0 conda-forge
pyshp 2.1.3 pyh44b312d_0 conda-forge
pysocks 1.7.1 py310hff52083_4 conda-forge
pystac 1.3.0 pyhd8ed1ab_0 conda-forge
python 3.10.2 h85951f9_3_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-utils 3.1.0 pyhd8ed1ab_0 conda-forge
python_abi 3.10 2_cp310 conda-forge
pytz 2021.3 pyhd8ed1ab_0 conda-forge
pytzdata 2020.1 pyh9f0ad1d_0 conda-forge
pyyaml 6.0 py310h6acc77f_3 conda-forge
qt 5.12.9 ha98a1a1_5 conda-forge
rasterio 1.2.10 py310h5e0f756_4 conda-forge
readline 8.1.2 h7f8727e_1
requests 2.27.1 pyhd8ed1ab_0 conda-forge
requests-futures 1.0.0 pyh9f0ad1d_2 conda-forge
rtree 0.9.7 py310hbdcdc62_3 conda-forge
s3transfer 0.5.1 pyhd8ed1ab_0 conda-forge
scikit-learn 1.0.2 py310h1246948_0 conda-forge
scipy 1.8.0 py310hea5193d_1 conda-forge
setuptools 60.8.1 py310hff52083_0 conda-forge
setuptools-scm 6.4.2 pyhd8ed1ab_0 conda-forge
setuptools_scm 6.4.2 hd8ed1ab_0 conda-forge
shapely 1.8.0 py310h1b8dd88_5 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
snuggs 1.4.7 py_0 conda-forge
spatialist 0.9.0 pyhd8ed1ab_0 conda-forge
sqlalchemy 1.4.31 py310h6acc77f_0 conda-forge
sqlalchemy-utils 0.38.2 pyhd8ed1ab_0 conda-forge
sqlite 3.37.2 hc218d9a_0
tblib 1.7.0 pyhd8ed1ab_0 conda-forge
threadpoolctl 3.1.0 pyh8a188c0_0 conda-forge
tiledb 2.6.2 h2038895_1 conda-forge
tk 8.6.11 h27826a3_1 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
tornado 6.1 py310h6acc77f_2 conda-forge
tqdm 4.62.3 pyhd8ed1ab_0 conda-forge
typing_extensions 4.0.1 pyha770c72_0 conda-forge
tzcode 2021e h7f98852_0 conda-forge
tzdata 2021e he74cb21_0 conda-forge
unicodedata2 14.0.0 py310h6acc77f_0 conda-forge
urllib3 1.26.8 pyhd8ed1ab_1 conda-forge
usgs 0.3.1 pyhd8ed1ab_0 conda-forge
werkzeug 2.0.3 pyhd8ed1ab_1 conda-forge
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
whoosh 2.7.4 py310hff52083_5 conda-forge
xerces-c 3.2.3 h8ce2273_4 conda-forge
xorg-kbproto 1.0.7 h14c3975_1002 conda-forge
xorg-libice 1.0.10 h516909a_0 conda-forge
xorg-libsm 1.2.3 hd9c2040_1000 conda-forge
xorg-libx11 1.7.2 h7f98852_0 conda-forge
xorg-libxau 1.0.9 h14c3975_0 conda-forge
xorg-libxdmcp 1.1.3 h516909a_0 conda-forge
xorg-libxext 1.3.4 h7f98852_1 conda-forge
xorg-libxrender 0.9.10 h7f98852_1003 conda-forge
xorg-renderproto 0.11.1 h14c3975_1002 conda-forge
xorg-xextproto 7.3.0 h14c3975_1002 conda-forge
xorg-xproto 7.0.31 h14c3975_1007 conda-forge
xyzservices 2022.1.1 pyhd8ed1ab_0 conda-forge
xz 5.2.5 h516909a_1 conda-forge
yaml 0.2.5 h7f98852_2 conda-forge
zipp 3.7.0 pyhd8ed1ab_1 conda-forge
zlib 1.2.11 h36c2ea0_1013 conda-forge
zstd 1.5.2 ha95c52a_0 conda-forge
Issue Analytics
- State:
- Created 2 years ago
- Comments:6 (3 by maintainers)
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@johntruckenbrodt Thanks it appeared after running the command.
See here for instructions on how to update SNAP from the command line: https://senbox.atlassian.net/wiki/spaces/SNAP/pages/30539785/Update+SNAP+from+the+command+line
Even if there are no updates to be installed this
messages.logfile will be created. I recommend to regularly run this to make sure you are using the latest version.