Missing maxentpy.maxent dependency for MaxEnt/3prime model
See original GitHub issuekipoi$get_model("MaxEntScan/3prime")
Error in py_call_impl(callable, dots$args, dots$keywords): ImportError: No module named maxentpy.maxent
Detailed traceback:
File "/users/annashch/kipoi/kipoi/model.py", line 77, in get_model
Mod = load_model_custom(**md.args)
File "/users/annashch/kipoi/kipoi/model.py", line 129, in load_model_custom
return getattr(load_module(file), object)
File "/users/annashch/kipoi/kipoi/utils.py", line 37, in load_module
module = imp.load_source(module_name, path)
File "model.py", line 12, in <module>
File "/users/annashch/.kipoi/models/MaxEntScan/3prime/../template/model_template.py", line 3, in <module>
from maxentpy.maxent import score5, score3, load_matrix5, load_matrix3
Traceback:
1. kipoi$get_model("MaxEntScan/3prime")
2. py_call_impl(callable, dots$args, dots$keywords)
(I don’t have permissions to assign issues to people, but I believe this model was contributed by @s6juncheng )
Issue Analytics
- State:
- Created 6 years ago
- Comments:13 (8 by maintainers)
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Ah, that makes sense.
In response to the other suggestions: annashch@nandi:/users/annashch/kipoi$ conda install --help | grep override [–override-channels] [-n ENVIRONMENT | -p PATH] [-q] –override-channels is given). You can use ‘defaults’ –override-channels Do not search default or .condarc channels. Requires
And running on the command line conda install -y --channel=bioconda --override-channels maxentpy (after doing a conda uninstall of maxentpy) works.
closed by https://github.com/kipoi/kipoi/pull/185