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Updating to 2.7 breaks dependency resolution

See original GitHub issue

It looks like the update to 2.7 (with the new dependency resolution mechanism) is not working. The example script here worked just fine in 2.5, but in 2.7 I get some java.lang.NoClassDefFoundError errors.

Here’s the full output:

[kscript] Resolving dependencies...
[kscript]     Resolving io.github.javaeden.orchid:OrchidAll:0.16.1...Done
[kscript]     Resolving com.github.holgerbrandl:kscript-annotations:1.2...Done
[kscript] Dependencies resolved
Using the following modules:
--------------------
 * com.eden.orchid.StandardModule

Exception in thread "main" java.lang.reflect.InvocationTargetException
    at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
    at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
    at Main_Start$Companion.main(Main_Start.kt:6)
    at Main_Start.main(Main_Start.kt)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.jetbrains.kotlin.runner.AbstractRunner.run(runners.kt:61)
    at org.jetbrains.kotlin.runner.Main.run(Main.kt:109)
    at org.jetbrains.kotlin.runner.Main.main(Main.kt:119)
Caused by: java.lang.NoClassDefFoundError: com/vladsch/flexmark/ext/aside/AsideExtension
    at com.eden.orchid.impl.compilers.markdown.FlexmarkModule.configure(FlexmarkModule.kt:19)
    at com.google.inject.AbstractModule.configure(AbstractModule.java:61)
    at com.google.inject.spi.Elements$RecordingBinder.install(Elements.java:344)
    at com.google.inject.AbstractModule.install(AbstractModule.java:103)
    at com.eden.orchid.api.registration.ClasspathModuleInstaller.lambda$configure$0(ClasspathModuleInstaller.java:28)
    at java.util.ArrayList.forEach(ArrayList.java:1257)
    at com.eden.orchid.api.registration.ClasspathModuleInstaller.configure(ClasspathModuleInstaller.java:23)
    at com.google.inject.AbstractModule.configure(AbstractModule.java:61)
    at com.google.inject.spi.Elements$RecordingBinder.install(Elements.java:344)
    at com.google.inject.AbstractModule.install(AbstractModule.java:103)
    at com.eden.orchid.StandardModule.configure(StandardModule.kt:34)
    at com.google.inject.AbstractModule.configure(AbstractModule.java:61)
    at com.google.inject.spi.Elements$RecordingBinder.install(Elements.java:344)
    at com.google.inject.spi.Elements.getElements(Elements.java:103)
    at com.google.inject.internal.InjectorShell$Builder.build(InjectorShell.java:137)
    at com.google.inject.internal.InternalInjectorCreator.build(InternalInjectorCreator.java:103)
    at com.google.inject.Guice.createInjector(Guice.java:87)
    at com.google.inject.Guice.createInjector(Guice.java:69)
    at com.eden.orchid.Orchid.start(Orchid.java:83)
    at Start.<init>(start.kts:45)
    ... 13 more
Caused by: java.lang.ClassNotFoundException: com.vladsch.flexmark.ext.aside.AsideExtension
    at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
    ... 33 more

This issue was initially discussed on the Orchid Gitter chat.