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ln -s -r error
See original GitHub issueHi, I am trying to run the pipeline on the dna-mapping stage. But right in the begining, I got an error caused by ln -s -r. Am I missing something?
localrule FASTQ1:
input: /gamma_data1/trezende/Mariy/Seq/4_ForthBatch/WTATAC_exTregIEL_S9_R1.fastq.gz
output: FASTQ/WTATAC_exTregIEL_S9_R1.fastq.gz
jobid: 122
wildcards: sample=WTATAC_exTregIEL_S9
Job failed, going on with independent jobs.
[Thu May 23 15:49:56 2019]
Error in rule FASTQ1:
jobid: 126
output: FASTQ/WTATAC_iTreg_S7_R1.fastq.gz
ln: invalid option -- 'r'
Try `ln --help' for more information.
Issue Analytics
- State:
- Created 4 years ago
- Comments:13 (8 by maintainers)
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or
snakePipes envInfoconda activate /ru-auth/local/home/trezende/envs/09389d85
Then conda install coreutils
conda deactivate
The name of the appropriate env is shown in the log before